Factsheet for TraesCS5D01G008300.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G121360.1	Barley	extracellular, mitochondrion, plastid, vacuole	18.69	98.36
TraesCS6D01G079900.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	67.6	95.59
TraesCS4B01G159100.1	Wheat	extracellular, golgi	65.73	92.95
Solyc01g048590.1.1	Tomato	extracellular, plasma membrane	22.43	86.75
Zm00001d000417_P001	Maize	plastid	93.46	84.99
TraesCS1D01G179900.1	Wheat	plastid	92.83	84.42
TraesCS1D01G071400.1	Wheat	cytosol, mitochondrion, plasma membrane, vacuole	68.22	77.11
PGSC0003DMT400046004	Potato	extracellular, vacuole	16.2	62.65
Solyc03g013500.1.1	Tomato	extracellular, vacuole	14.02	53.57
Solyc05g016120.1.1	Tomato	endoplasmic reticulum, plasma membrane	33.96	46.78

Protein Annotations

MapMan:1.1.1.2.1.1	Gene3D:1.20.85.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979	GO:GO:0019684
GO:GO:0045156	InterPro:IPR036854	HAMAP:MF_01379	PFAM:PF00124	PRINTS:PR00256	ScanProsite:PS00244
InterPro:PSII_D1	PANTHER:PTHR33149	PANTHER:PTHR33149:SF11	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483
TIGRFAMs:TIGR01151	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5D01G008300	EnsemblPlants:TraesCS5D01G008300.1	SEG:seg	:

Description

No Description!

Coordinates

chr5D:+:6186436..6187401

Molecular Weight (calculated)

35366.3 Da

IEP (calculated)

4.775

GRAVY (calculated)

0.314

Length

321 amino acids

Sequence
(BLAST)

001: MVRCFDDPYL IDRNFCIIAF IASPPVDIDG IREPVSGSLL YGNNIISGAI IPTSAAIGLH FYPIWEAASV DEWLYNGGPY ELIVLHFLLG VACYMGREWE
101: LSFRLGMRPW IAVAYSAPVA AATAVFLIYP IGQGSFSDGM PLGISGTFNF MIVFQAEHNI LRHPFHMLGV AGVFGGSLFS AMHGSLVTSS LIRETTENES
201: PNEGYKFGQE EETYNIVAAH GYFGQLIFQY ASFNNSRSLH FFLAAWPVVG IWFTALGIST MAFNLNGFNF NQSVVDSQGR VINTWADIIN RANLGMEVMH
301: EHNAHNFPLD LAAVEVPSIN G

Best Arabidopsis Sequence Match ( ATCG00020.1 )
(BLAST)

001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG

Arabidopsis Description

PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.