Factsheet for TraesCS1D01G179900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, secretory
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	vacuole

plastid: 22056444
plastid: 22160430
golgi: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 22056444 doi

Q Meng, L Rao, X Xiang, C Zhou, X Zhang, Y Pan

College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AGP50735	Barley	extracellular, mitochondrion, plasma membrane, vacuole	97.73	97.73
TraesCS6D01G079900.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	62.32	96.92
TraesCS5D01G008300.1	Wheat	plasma membrane	84.42	92.83
TraesCS1D01G071400.1	Wheat	cytosol, mitochondrion, plasma membrane, vacuole	73.94	91.9
Solyc01g048590.1.1	Tomato	extracellular, plasma membrane	20.4	86.75
PGSC0003DMT400046004	Potato	extracellular, vacuole	14.16	60.24
Solyc03g013500.1.1	Tomato	extracellular, vacuole	13.88	58.33
Solyc05g016120.1.1	Tomato	endoplasmic reticulum, plasma membrane	37.96	57.51

Protein Annotations

MapMan:1.1.1.2.1.1	Gene3D:1.20.85.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979	GO:GO:0019684
GO:GO:0045156	InterPro:IPR036854	HAMAP:MF_01379	PFAM:PF00124	PRINTS:PR00256	ScanProsite:PS00244
InterPro:PSII_D1	PANTHER:PTHR33149	PANTHER:PTHR33149:SF11	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483
TIGRFAMs:TIGR01151	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1D01G179900	EnsemblPlants:TraesCS1D01G179900.1	TIGR:cd09289	SEG:seg

Description

No Description!

Coordinates

chr1D:-:254399649..254400710

Molecular Weight (calculated)

38966.8 Da

IEP (calculated)

5.079

GRAVY (calculated)

0.372

Length

353 amino acids

Sequence
(BLAST)

001: MTAILERRES TSLWGRFCNW ITSTENRLYF GWFGVLMIPT LLIATSVFII AFIAAPPVDI DGIREPISGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL IGVACYMGRE WELSFRLGTR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYKFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRIINTWADI INRANLGMEV MHERNAHNFP LDLAAVEVPS ING

Best Arabidopsis Sequence Match ( ATCG00020.1 )
(BLAST)

001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG

Arabidopsis Description

PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.