Factsheet for Solyc01g048590.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

plastid 3
mitochondrion 3
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g039030.1.1	Tomato	endoplasmic reticulum	57.83	90.57
PGSC0003DMT400046004	Potato	extracellular, vacuole	55.42	55.42
Solyc11g013780.1.1	Tomato	cytosol, plastid	42.17	49.3
TraesCS6D01G079900.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	86.75	31.72
TraesCS4B01G159100.1	Wheat	extracellular, golgi	83.13	30.4
Solyc11g056340.1.1	Tomato	endoplasmic reticulum	22.89	30.16
Solyc02g010610.1.1	Tomato	cytosol	20.48	26.98
TraesCS5D01G008300.1	Wheat	plasma membrane	86.75	22.43
Solyc03g013500.1.1	Tomato	extracellular, vacuole	21.69	21.43
AGP50735	Barley	extracellular, mitochondrion, plasma membrane, vacuole	87.95	20.68
Zm00001d000417_P001	Maize	plastid	87.95	20.68
TraesCS1D01G179900.1	Wheat	plastid	86.75	20.4
HORVU2Hr1G070570.1	Barley	extracellular, mitochondrion, plasma membrane, vacuole	85.54	20.11
HORVU2Hr1G121820.5	Barley	extracellular, mitochondrion, plasma membrane, vacuole	85.54	20.11
Solyc02g011990.1.1	Tomato	plastid	51.81	16.48
Solyc05g016120.1.1	Tomato	endoplasmic reticulum, plasma membrane	38.55	13.73
Solyc01g097530.1.1	Tomato	plasma membrane	16.87	13.08
Solyc11g030830.1.1	Tomato	cytosol	13.25	11.96
Solyc02g021290.1.1	Tomato	cytosol, nucleus	0.0	0.0
HORVU2Hr1G121360.1	Barley	extracellular, mitochondrion, plastid, vacuole	0.0	0.0

Protein Annotations

Gene3D:1.20.85.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0019684	GO:GO:0045156	InterPro:IPR036854	UniProt:K4AVE0	PFAM:PF00124
PANTHER:PTHR33149	PANTHER:PTHR33149:SF11	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483	EnsemblPlantsGene:Solyc01g048590.1
EnsemblPlants:Solyc01g048590.1.1	TMHMM:TMhelix	UniParc:UPI000276334E	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:45009456..45009827

Molecular Weight (calculated)

9151.4 Da

IEP (calculated)

9.257

GRAVY (calculated)

0.502

Length

83 amino acids

Sequence
(BLAST)

1: MGREWELSFR LGMRPWIAVA YSAPVAAATA VFLIHPIGQG SFYDGMPLGI SSTSNFMIVF QAEHKILMHP FHMLGVAGKI LKC

Best Arabidopsis Sequence Match ( ATCG00020.1 )
(BLAST)

001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG

Arabidopsis Description

PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.