Factsheet for HORVU2Hr1G121820.5

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, extracellular, vacuole

Predictor Summary:

extracellular 1
mitochondrion 1
plasma membrane 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion, plasma membrane, vacuole
Any Predictor:	extracellular, mitochondrion, plasma membrane, vacuole
MultiLoc:	extracellular
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G121360.1	Barley	extracellular, mitochondrion, plastid, vacuole	17.28	100.0
AGP50735	Barley	extracellular, mitochondrion, plasma membrane, vacuole	99.15	99.15
HORVU2Hr1G070570.1	Barley	extracellular, mitochondrion, plasma membrane, vacuole	97.45	97.45
HORVU1Hr1G017870.1	Barley	extracellular, vacuole	20.68	97.33
HORVU5Hr1G004630.2	Barley	plasma membrane	90.08	96.66
HORVU3Hr1G004790.1	Barley	cytosol	15.01	94.64
HORVU2Hr1G043240.1	Barley	extracellular	10.2	92.31
Solyc01g048590.1.1	Tomato	extracellular, plasma membrane	20.11	85.54
HORVU0Hr1G024720.1	Barley	golgi, mitochondrion	47.88	82.04
HORVU6Hr1G046820.1	Barley	cytosol, mitochondrion, plasma membrane, vacuole	45.04	80.71
PGSC0003DMT400046004	Potato	extracellular, vacuole	13.88	59.04
Solyc05g016120.1.1	Tomato	endoplasmic reticulum, plasma membrane	38.81	58.8
Solyc03g013500.1.1	Tomato	extracellular, vacuole	13.88	58.33

Protein Annotations

MapMan:1.1.1.2.1.1	Gene3D:1.20.85.10	UniProt:A0A287JQB8	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009635	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0016491	GO:GO:0016682	GO:GO:0019684
GO:GO:0045156	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:HORVU2Hr1G121820	EnsemblPlants:HORVU2Hr1G121820.5	InterPro:IPR036854
HAMAP:MF_01379	PFAM:PF00124	PRINTS:PR00256	ScanProsite:PS00244	InterPro:PSII_D1	PANTHER:PTHR33149
PANTHER:PTHR33149:SF11	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483	TIGRFAMs:TIGR01151	TMHMM:TMhelix
UniParc:UPI000B46039E	:	:	:	:	:

Description

Photosystem II protein D1 [Source:UniProtKB/TrEMBL;Acc:A0A287JQB8]

Coordinates

chrchr2H:+:751783858..751784919

Molecular Weight (calculated)

38897.8 Da

IEP (calculated)

4.936

GRAVY (calculated)

0.360

Length

353 amino acids

Sequence
(BLAST)

001: MTAILERRES TSLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE CELSFRLGMR PWIAVAYSTP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYKFG QEEETYNIVD AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEVPA ING

Best Arabidopsis Sequence Match ( ATCG00020.1 )
(BLAST)

001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG

Arabidopsis Description

PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.