Factsheet for Solyc05g016120.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

plastid 3
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 4
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g039030.1.1	Tomato	endoplasmic reticulum	13.73	60.38
AGP50735	Barley	extracellular, mitochondrion, plasma membrane, vacuole	59.66	39.38
Zm00001d000417_P001	Maize	plastid	59.66	39.38
HORVU2Hr1G121820.5	Barley	extracellular, mitochondrion, plasma membrane, vacuole	58.8	38.81
Solyc01g048590.1.1	Tomato	extracellular, plasma membrane	13.73	38.55
HORVU2Hr1G070570.1	Barley	extracellular, mitochondrion, plasma membrane, vacuole	57.94	38.24
TraesCS1D01G179900.1	Wheat	plastid	57.51	37.96
PGSC0003DMT400046004	Potato	extracellular, vacuole	12.88	36.14
TraesCS5D01G008300.1	Wheat	plasma membrane	46.78	33.96
Solyc02g011990.1.1	Tomato	plastid	23.61	21.07
TraesCS6D01G079900.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	13.3	13.66
TraesCS4B01G159100.1	Wheat	extracellular, golgi	12.45	12.78
Solyc11g013780.1.1	Tomato	cytosol, plastid	1.72	5.63
Solyc03g013500.1.1	Tomato	extracellular, vacuole	1.72	4.76
Solyc01g097530.1.1	Tomato	plasma membrane	2.15	4.67
Solyc11g030830.1.1	Tomato	cytosol	1.29	3.26
Solyc02g010610.1.1	Tomato	cytosol	0.0	0.0
Solyc02g021290.1.1	Tomato	cytosol, nucleus	0.0	0.0
Solyc11g056340.1.1	Tomato	endoplasmic reticulum	0.0	0.0
HORVU2Hr1G121360.1	Barley	extracellular, mitochondrion, plastid, vacuole	0.0	0.0

Protein Annotations

MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009522	GO:GO:0009579	GO:GO:0009772
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0019684	GO:GO:0045156
InterPro:IPR036854	UniProt:K4BYX6	PFAM:PD003698	PFAM:PF00124	PFAM:PF02392	InterPro:PSI_Ycf4_assembly
PANTHER:PTHR33149	PANTHER:PTHR33149:SF11	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483	EnsemblPlantsGene:Solyc05g016120.1
EnsemblPlants:Solyc05g016120.1.1	TMHMM:TMhelix	UniParc:UPI0002766C89	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:-:14606094..14607288

Molecular Weight (calculated)

26049.3 Da

IEP (calculated)

6.892

GRAVY (calculated)

0.750

Length

233 amino acids

Sequence
(BLAST)

001: MYDIWIELIT GSRKISNFCW ALILFICSLG FLLVGTSSYL GSGYDRFDRK KGIVCIFHWG FPGKNRRIFL YPYALQRYKM QIASTENCLY IGWFGVLMIP
101: TLLTATSVFI IAFIAAPPVD IDGIREPVSG SLLYGNNIIS GAIIPTSAAI GLHFYPMWEA ASVDEWLYNG GPYELIVLHL LLGVACYMGH EWELSFCLGM
201: RPWIAVAYSA PVAAATAVFL ILYIVLITFV INL

Best Arabidopsis Sequence Match ( ATCG00020.1 )
(BLAST)

001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG

Arabidopsis Description

PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.