Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- extracellular 3
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 3
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g048590.1.1 | Tomato | extracellular, plasma membrane | 31.72 | 86.75 |
| TraesCS1D01G071400.1 | Wheat | cytosol, mitochondrion, plasma membrane, vacuole | 84.58 | 67.61 |
| TraesCS5D01G008300.1 | Wheat | plasma membrane | 95.59 | 67.6 |
| TraesCS1D01G179900.1 | Wheat | plastid | 96.92 | 62.32 |
| HORVU2Hr1G070570.1 | Barley | extracellular, mitochondrion, plasma membrane, vacuole | 95.15 | 61.19 |
| PGSC0003DMT400046004 | Potato | extracellular, vacuole | 22.03 | 60.24 |
| Solyc03g013500.1.1 | Tomato | extracellular, vacuole | 18.94 | 51.19 |
| Solyc05g016120.1.1 | Tomato | endoplasmic reticulum, plasma membrane | 13.66 | 13.3 |
Protein Annotations
| Gene3D:1.20.85.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006091 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009772 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0019684 | GO:GO:0045156 |
| InterPro:IPR036854 | PFAM:PF00124 | PRINTS:PR00256 | ScanProsite:PS00244 | PANTHER:PTHR33149 | PANTHER:PTHR33149:SF11 |
| InterPro:Photo_II_D1/D2_sf | InterPro:Photo_RC_L/M | SUPFAM:SSF81483 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS6D01G079900 | EnsemblPlants:TraesCS6D01G079900.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:45517348..45518031
Molecular Weight (calculated)
25089.0 Da
IEP (calculated)
5.791
GRAVY (calculated)
0.244
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MGREWELSFR LGMRPWIAVA YSAPIAAATA VFLIYPIGQG SFSDGMPLGI SGTFNFMIVF QAEHNILMHP FHMLGVAGVF GGSLFSAMHG SLVTSSLIRE
101: TTENESANEG YKFGQDEETY NIVAAHGYFG RLIFQYASFN NSRSLHFFLA AWPVVGIWFT ALGISTMAFN LNGFNFNQFV VDSQGRVINT WADIINRANL
201: GMEVMHERNA HNFPLDLAAI EVPSING
101: TTENESANEG YKFGQDEETY NIVAAHGYFG RLIFQYASFN NSRSLHFFLA AWPVVGIWFT ALGISTMAFN LNGFNFNQFV VDSQGRVINT WADIINRANL
201: GMEVMHERNA HNFPLDLAAI EVPSING
001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG
Arabidopsis Description
PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.