Factsheet for PGSC0003DMT400046004

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g048590.1.1	Tomato	extracellular, plasma membrane	55.42	55.42
PGSC0003DMT400004989	Potato	extracellular	26.51	22.45
TraesCS6D01G079900.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	60.24	22.03
PGSC0003DMT400041003	Potato	vacuole	45.78	21.47
TraesCS4B01G159100.1	Wheat	extracellular, golgi	57.83	21.15
TraesCS5D01G008300.1	Wheat	plasma membrane	62.65	16.2
AGP50735	Barley	extracellular, mitochondrion, plasma membrane, vacuole	61.45	14.45
Zm00001d000417_P001	Maize	plastid	61.45	14.45
TraesCS1D01G179900.1	Wheat	plastid	60.24	14.16
HORVU2Hr1G070570.1	Barley	extracellular, mitochondrion, plasma membrane, vacuole	59.04	13.88
HORVU2Hr1G121820.5	Barley	extracellular, mitochondrion, plasma membrane, vacuole	59.04	13.88
Solyc05g016120.1.1	Tomato	endoplasmic reticulum, plasma membrane	36.14	12.88
PGSC0003DMT400010772	Potato	cytosol, plasma membrane, vacuole	56.63	5.99
PGSC0003DMT400094795	Potato	cytosol, extracellular, peroxisome	1.2	0.71
HORVU2Hr1G121360.1	Barley	extracellular, mitochondrion, plastid, vacuole	0.0	0.0

Protein Annotations

Gene3D:1.20.85.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0019684	GO:GO:0045156	InterPro:IPR036854	UniProt:M1BII5	PFAM:PF00124
EnsemblPlantsGene:PGSC0003DMG400017848	PGSC:PGSC0003DMG400017848	EnsemblPlants:PGSC0003DMT400046004	PANTHER:PTHR33149	PANTHER:PTHR33149:SF11	InterPro:Photo_II_D1/D2_sf
InterPro:Photo_RC_L/M	SUPFAM:SSF81483	TMHMM:TMhelix	UniParc:UPI00029570B0	:	:

Description

Photosystem Q(B) protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017848]

Coordinates

chr8:-:4208491..4209407

Molecular Weight (calculated)

8950.9 Da

IEP (calculated)

6.683

GRAVY (calculated)

0.202

Length

83 amino acids

Sequence
(BLAST)

1: MGREWELSFR LGMPPWIAVA YSAPVATATA VFLIYPIGQG SFSDGMPLGT SGVKNQLVTI IERGEIQWAS SNPKNLTLSP VQV

Best Arabidopsis Sequence Match ( ATCG00020.1 )
(BLAST)

001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG

Arabidopsis Description

PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.