Factsheet for PGSC0003DMT400010772

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:

plastid 3
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, vacuole
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041003	Potato	vacuole	21.94	97.18
CDY07596	Canola	vacuole	23.6	87.68
PGSC0003DMT400094795	Potato	cytosol, extracellular, peroxisome	15.05	84.29
PGSC0003DMT400046004	Potato	extracellular, vacuole	5.99	56.63
PGSC0003DMT400004989	Potato	extracellular	5.74	45.92

Protein Annotations

MapMan:1.1.1.2.1.1	Gene3D:1.20.85.10	Gene3D:2.40.30.10	Gene3D:3.40.50.10050	EntrezGene:4099946	wikigene:4099946
ProteinID:ABB90023	ProteinID:ABB90023.1	ProteinID:ABD47037	ProteinID:ABD47037.1	ProteinID:AEB72119	ProteinID:AEB72119.1
ProteinID:AEB72205	ProteinID:AEB72205.1	EMBL:DQ231562	EMBL:DQ386163	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009507	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009635
GO:GO:0009772	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0016491	GO:GO:0016682	GO:GO:0018298	GO:GO:0019538	GO:GO:0019684	GO:GO:0045156
GO:GO:0046872	GO:GO:0055114	InterPro:IPR036854	InterPro:IPR036925	EMBL:JF772170	EMBL:JF772171
UniProt:M0ZYJ3	HAMAP:MF_01379	PFAM:PF00124	PFAM:PF11987	EnsemblPlantsGene:PGSC0003DMG400004211	PGSC:PGSC0003DMG400004211
EnsemblPlants:PGSC0003DMT400010772	ScanProsite:PS00244	InterPro:PSII_D1	PANTHER:PTHR33149	PANTHER:PTHR33149:SF11	InterPro:Photo_II_D1/D2_sf
InterPro:Photo_RC_L/M	SUPFAM:SSF50447	SUPFAM:SSF52156	SUPFAM:SSF81483	InterPro:TIF_IF2_dom3	InterPro:TIF_IF2_dom3_sf
TIGRFAMs:TIGR01151	TMHMM:TMhelix	InterPro:Transl_B-barrel_sf	UniParc:UPI000294E5F6	EntrezGene:psbA	wikigene:psbA
SEG:seg	:	:	:	:	:

Description

Photosystem Q(B) protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004211]

Coordinates

chr1:+:53785743..53794560

Molecular Weight (calculated)

86699.5 Da

IEP (calculated)

5.417

GRAVY (calculated)

0.125

Length

784 amino acids

Sequence
(BLAST)

001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GNSGTFNFMI VFQAEHNILM HPFHMLGVAG
201: VFGGSLFSAM HGSLVTSSLI RETTENESAN EGYRFGQEEE TYNIVAAHGY FGRLIFQYAS FNNSRSLHFF LAAWPVVGIW FTALGISTMA FNLNGFNFNQ
301: SVVDSQGRVI NTWADIINRA NLGFITTPLT TGRLPSQRLD PALPKLFWFT PTFPTCPTVA EQFLDIKRTS PEGNFNVADF PSFAISFATA PAALANCPPF
401: PSVISMLCMA VPKGISVECT VLEVKAIEGH GTTIDVVLIN GPYCHLNPCI IDASPNEGTL NKGTKLCVLD AFSFDYLGSY LHHKEIKAAQ GININAQGLE
501: YAIAGTSLYV VGPDDDVEHI KEAAMEDMRS VMSRIDRSGE GVYVQASTFG SLEALLEFLK TDEVRIPVSG IGIGPVHKKD VMKASVMLEK KKEYATILAF
601: DVKVTQEAQE LADEAGVKNF IADIIYHLFD QFKAYIDNLK EEKKKEVAEE AVFPCSLKIV PNHVYNKKDP IVVGVDVLEG IARVGTPICI PQREFIDIGQ
701: IASIENNHRP VDSAKKGQRV SIKIVGSNCE EIQKMFGRHF EMEDDLVSKV SRRSIDILKA NFRNELSIED WRLVKTLKNL FKIQ

Best Arabidopsis Sequence Match ( ATCG00020.1 )
(BLAST)

Arabidopsis Description

PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.