Factsheet for PGSC0003DMT400094795

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0473150-00	Rice	cytosol, peroxisome	92.86	96.3
Solyc11g056340.1.1	Tomato	endoplasmic reticulum	21.43	47.62
Solyc02g010610.1.1	Tomato	cytosol	17.14	38.1
PGSC0003DMT400041003	Potato	vacuole	22.14	17.51
PGSC0003DMT400010772	Potato	cytosol, plasma membrane, vacuole	84.29	15.05
PGSC0003DMT400046004	Potato	extracellular, vacuole	0.71	1.2
PGSC0003DMT400004989	Potato	extracellular	0.0	0.0

Protein Annotations

MapMan:35.1	ProteinID:ACK76286	ProteinID:ACK76286.1	EMBL:FJ493315	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009772	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0019684	GO:GO:0045156	InterPro:IPR036854
UniProt:M1DUW7	PFAM:PF00124	EnsemblPlantsGene:PGSC0003DMG400044366	PGSC:PGSC0003DMG400044366	EnsemblPlants:PGSC0003DMT400094795	PANTHER:PTHR33149
PANTHER:PTHR33149:SF11	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483	TMHMM:TMhelix	UniParc:UPI0002954A02

Description

Photosystem Q(B) protein [Source:PGSC_GENE;Acc:PGSC0003DMG400044366]

Coordinates

chr7:+:40425659..40426081

Molecular Weight (calculated)

15637.3 Da

IEP (calculated)

5.074

GRAVY (calculated)

-0.109

Length

140 amino acids

Sequence
(BLAST)

001: MHGSLVTSSL IRETTENESA NEGYRFGQEE ETYNIVAAHG YFGRLIFQYA SFNNSRSLHF FLAAWPVVGI WFTALGISTM AFNLNGFNFN QSVVDSQGRV
101: INTWADIINR ANLGMEVMHE RNAHNFPLDL AAIEAPSTNG

Best Arabidopsis Sequence Match ( ATCG00020.1 )
(BLAST)

001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG

Arabidopsis Description

PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.