CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 3
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07595	Canola	plastid	97.63	58.36
PGSC0003DMT400010772	Potato	cytosol, plasma membrane, vacuole	87.68	23.6

Protein Annotations

Gene3D:1.20.85.10	MapMan:35.1	GO:A0A078F2K8	UniProt:A0A078F2K8	EnsemblPlants:CDY07596	ProteinID:CDY07596
ProteinID:CDY07596.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0019684	GO:GO:0045156	EnsemblPlantsGene:GSBRNA2T00124692001	InterPro:IPR036854	PFAM:PF00124	ScanProsite:PS00244
PANTHER:PTHR33149	PANTHER:PTHR33149:SF11	MetaCyc:PWY-101	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483
TMHMM:TMhelix	UniParc:UPI0004EF2F04	:	:	:	:

Description

BnaC06g14680DBnaC06g14680D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078F2K8]

Coordinates

chrLK031979:+:993997..995118

Molecular Weight (calculated)

23311.8 Da

IEP (calculated)

5.458

GRAVY (calculated)

0.197

Length

211 amino acids

Sequence
(BLAST)

001: MTAILERRES ESLWAPVAAA TAVFLIYPIG QGSFSDGMPL GISGTFNFMI VFQAEHNILM HPFHMLGVAG VFGGSLFSAM HGSLVTSSLI RETTENESAN
101: EGYRFGQEEE TYNIVAAHGY FGRLIFQYAS FNNSRSLHFF LAAWPVVGIW FTALGISTMA FNLNGFNFNQ SVVDSQGRVI NTWADIINRA NLGMEVMHER
201: NAHNFPLDLA A

Best Arabidopsis Sequence Match ( ATCG00020.1 )
(BLAST)

001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG

Arabidopsis Description

PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.