CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, vacuole
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

plastid: 25255860

msms PMID: 25255860 doi

RK Tewari, M Satoh, S Kado, K Mishina, M Anma, K Enami, M Hanaoka, M Watanabe

Laboratory of Plant Nutrition, Faculty of Horticulture, Chiba University, 648 Matsudo, Chiba, 271-8510, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX77209
CDX92401
CDX95314
CDY07595
CDY23174
CDY31733

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00020.1	CDX77209	AT2G28800.1	15988575
ATCG00020.1	CDY31733	AT2G28800.1	15988575
ATCG00020.1	CDX73678	AT3G51920.1	17360592
ATCG00020.1	CDX95314	AT3G51920.1	17360592
ATCG00020.1	CDY23174	AT3G51920.1	17360592
ATCG00020.1	CDX92401	AT5G21274.1	17360592
ATCG00020.1	CDY07595	ATCG00020.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
ATCG00020.1	Thale cress	cytosol, plasma membrane, vacuole	99.72	99.72
CAA34007	Rice	extracellular, plasma membrane	98.58	98.58
CDY07596	Canola	vacuole	58.36	97.63
PGSC0003DMT400041003	Potato	vacuole	48.73	97.18
HORVU5Hr1G004630.2	Barley	plasma membrane	90.37	96.96
KRH17937	Soybean	mitochondrion, nucleus	73.09	95.2
TraesCS1D01G071400.1	Wheat	cytosol, mitochondrion, plasma membrane, vacuole	74.22	92.25
TraesCS5A01G103300.1	Wheat	extracellular	35.41	91.24
HORVU0Hr1G024720.1	Barley	golgi, mitochondrion	48.16	82.52
HORVU6Hr1G046820.1	Barley	cytosol, mitochondrion, plasma membrane, vacuole	44.19	79.19
VIT_08s0058g01080.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	8.22	74.36
KRH57629	Soybean	cytosol	17.56	56.36
Zm00001d034153_P001	Maize	cytosol	31.44	42.69

Protein Annotations

MapMan:1.1.1.2.1.1	Gene3D:1.20.85.10	ProteinID:ACY66266.1	ProteinID:AIK28984.1	ProteinID:AIZ06060.1	ProteinID:AKD00069.1
ProteinID:ASY94995.1	EnsemblPlants:CDY07595	ProteinID:CDY07595	ProteinID:CDY07595.1	GO:D1L8L8	UniProt:D1L8L8
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009635	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0016491	GO:GO:0016682	GO:GO:0018298	GO:GO:0019538
GO:GO:0019684	GO:GO:0042651	GO:GO:0045156	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00124689001
InterPro:IPR036854	HAMAP:MF_01379	PFAM:PF00124	PRINTS:PR00256	ScanProsite:PS00244	InterPro:PSII_D1
PANTHER:PTHR33149	PANTHER:PTHR33149:SF11	MetaCyc:PWY-101	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483
TIGRFAMs:TIGR01151	TMHMM:TMhelix	UniParc:UPI000188DE94	SEG:seg	:	:

Description

BnaC06g14690DPhotosystem II protein D1 [Source:Projected from Arabidopsis thaliana (ATCG00020) UniProtKB/Swiss-Prot;Acc:P83755]

Coordinates

chrLK031979:+:987927..989043

Molecular Weight (calculated)

38950.8 Da

IEP (calculated)

4.942

GRAVY (calculated)

0.349

Length

353 amino acids

Sequence
(BLAST)

001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS ING

Best Arabidopsis Sequence Match ( ATCG00020.1 )
(BLAST)

Arabidopsis Description

PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.