CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	plastid

nucleus: 21132161
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH17937
KRH18664
KRH24811
KRH29812
KRH57629

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00020.1	KRH24811	AT2G28800.1	15988575
ATCG00020.1	KRH29812	AT2G28800.1	15988575
ATCG00020.1	KRG89812	AT2G41090.1	17360592
ATCG00020.1	KRG94975	AT2G41090.1	17360592
ATCG00020.1	KRH18664	AT2G41090.1	17360592
ATCG00020.1	KRG89812	AT2G41100.1	17360592
ATCG00020.1	KRG94975	AT2G41100.1	17360592
ATCG00020.1	KRH18664	AT2G41100.1	17360592
ATCG00020.1	KRG89812	AT5G21274.1	17360592
ATCG00020.1	KRG94975	AT5G21274.1	17360592
ATCG00020.1	KRH18664	AT5G21274.1	17360592
ATCG00020.1	KRH17937	ATCG00020.1	15988575
ATCG00020.1	KRH57629	ATCG00020.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g056340.1.1	Tomato	endoplasmic reticulum	20.3	87.3
Solyc02g010610.1.1	Tomato	cytosol	17.71	76.19
CDY07595	Canola	plastid	95.2	73.09
ATCG00020.1	Thale cress	cytosol, plasma membrane, vacuole	94.83	72.8
CAA34007	Rice	extracellular, plasma membrane	94.1	72.24
KRH30143	Soybean	cytosol, plasma membrane	61.25	71.55
TraesCS1D01G071400.1	Wheat	cytosol, mitochondrion, plasma membrane, vacuole	71.22	67.96
PGSC0003DMT400041003	Potato	vacuole	32.47	49.72
KRH57629	Soybean	cytosol	5.17	12.73

Protein Annotations

Gene3D:1.20.85.10	MapMan:35.1	UniProt:A0A0R0GHN3	EMBL:ACUP02007991	EnsemblPlantsGene:GLYMA_13G028200	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009507	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009635
GO:GO:0009772	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0016491	GO:GO:0018298	GO:GO:0019538	GO:GO:0019684	GO:GO:0045156	GO:GO:0046872
GO:GO:0055114	InterPro:IPR036854	EnsemblPlants:KRH17937	ProteinID:KRH17937	ProteinID:KRH17937.1	PFAM:PF00124
PANTHER:PTHR33149	PANTHER:PTHR33149:SF11	MetaCyc:PWY-101	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483
TMHMM:TMhelix	UniParc:UPI0006EDA3F3	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:7358237..7359106

Molecular Weight (calculated)

29817.6 Da

IEP (calculated)

4.805

GRAVY (calculated)

0.295

Length

271 amino acids

Sequence
(BLAST)

001: DIDGIREPVS GSLLYGNNII SGAIIPTSAA IGLHFYPIWE AASVDEWLYN GGPYELIILH FLLGVACYMG PATAVFLIYP IGQGSFSDGM PLGISGTSNF
101: MIVFQAKHNI LMHPFHMLVV AGVFGGSLFS AMHDSLVTFS LIRETTENES ANEGYRFGQE EETYNIVVAH GYFGRLIFQY ASFNNSRSLH FFFAAWPIVG
201: IWFTALGINT MAFNLNGFNF NQSVVDSQGR VINTWADIIN RANLGMEVMH ERNAHNFPLD LAAIDAPSIN G

Best Arabidopsis Sequence Match ( ATCG00020.1 )
(BLAST)

001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG

Arabidopsis Description

PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.