CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane

Predictor Summary:

plastid 1
cytosol 1
extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	secretory
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0052g01680.t01	Wine grape	extracellular, vacuole	34.48	93.02
HORVU2Hr1G043240.1	Barley	extracellular	15.52	92.31
Solyc12g039030.1.1	Tomato	endoplasmic reticulum	20.69	90.57
Solyc11g013780.1.1	Tomato	cytosol, plastid	19.83	64.79
KRH17937	Soybean	mitochondrion, nucleus	71.55	61.25
Solyc11g030830.1.1	Tomato	cytosol	12.93	32.61
KRH57629	Soybean	cytosol	0.86	1.82

Protein Annotations

Gene3D:1.20.85.10	MapMan:35.1	UniProt:A0A0R0HV99	EMBL:ACUP02006880	EnsemblPlantsGene:GLYMA_11G162200	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009772
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0019684	GO:GO:0045156
InterPro:IPR036854	EnsemblPlants:KRH30143	ProteinID:KRH30143	ProteinID:KRH30143.1	PFAM:PF00124	PRINTS:PR00256
ScanProsite:PS00244	PANTHER:PTHR33149	PANTHER:PTHR33149:SF11	MetaCyc:PWY-101	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M
SUPFAM:SSF81483	TMHMM:TMhelix	UniParc:UPI0006ED8BCF	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr11:-:15042033..15042903

Molecular Weight (calculated)

25871.1 Da

IEP (calculated)

5.465

GRAVY (calculated)

0.354

Length

232 amino acids

Sequence
(BLAST)

001: IPTSAAIGLH FYPIWEAASV DEWLYSGGPY ELIVLHFLLG VACYMGCEWE LSFRLGMRPS IAVAYSAPVA AATAVFLIYP IGQGSFSDGM PLRILGTFNF
101: MIVFQAEHNI LMHPFHMLGV AGVFGGSLFS AMHGSLVTSC LIRETTENES ANEGYRFGQE EETYNIVAAH GYFGRLIFQY ASFNNCRSLH FFLAAWLVVE
201: HNCAQFRIYY DGRVDKTVVE CTITTTIIDR TP

Best Arabidopsis Sequence Match ( ATCG00020.1 )
(BLAST)

001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG

Arabidopsis Description

PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
SUBAcon: [cytosol,plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.