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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, extracellular

Predictor Summary:
  • plastid 1
  • extracellular 2
  • endoplasmic reticulum 1
  • vacuole 2
  • plasma membrane 2
  • golgi 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, plasma membrane
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:plastid
MultiLoc:extracellular
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:plasma membrane
YLoc:vacuole
plasma membrane: 27800704
extracellular: 28232208
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
ATCG00020.1 Thale cress cytosol, plasma membrane, vacuole 98.58 98.58
CDY07595 Canola plastid 98.58 98.58
Os04t0473150-00 Rice cytosol, peroxisome 37.39 97.78
PGSC0003DMT400041003 Potato vacuole 48.44 96.61
KRH17937 Soybean mitochondrion, nucleus 72.24 94.1
TraesCS1D01G071400.1 Wheat cytosol, mitochondrion, plasma membrane, vacuole 74.22 92.25
TraesCS5A01G103300.1 Wheat extracellular 35.41 91.24
HORVU6Hr1G046820.1 Barley cytosol, mitochondrion, plasma membrane, vacuole 44.48 79.7
VIT_08s0058g01080.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 8.22 74.36
KRH57629 Soybean cytosol 17.28 55.45
Zm00001d034153_P001 Maize cytosol 31.44 42.69
Protein Annotations
MapMan:1.1.1.2.1.1Gene3D:1.20.85.10EntrezGene:29141328EntrezGene:3131409ProteinID:AAA84591.1ProteinID:AAS46104.1
ProteinID:ADD62817.1ProteinID:AJC99294.1ProteinID:AJC99383.1ProteinID:BAD09798.1ProteinID:BAD10401.1ProteinID:BAF14210.1
EnsemblPlants:CAA34007EnsemblPlantsGene:CAA34007ProteinID:CAA34007ProteinID:CAA34007.1ProteinID:CAE05900.1GO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005506GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0006091GO:GO:0006464GO:GO:0006950GO:GO:0008150GO:GO:0008152
GO:GO:0009055GO:GO:0009507GO:GO:0009523GO:GO:0009535GO:GO:0009536GO:GO:0009579
GO:GO:0009635GO:GO:0009772GO:GO:0009987GO:GO:0015979GO:GO:0016020GO:GO:0016021
GO:GO:0016168GO:GO:0016491GO:GO:0016682GO:GO:0018298GO:GO:0019538GO:GO:0019684
GO:GO:0045156GO:GO:0046872GO:GO:0055114InterPro:IPR036854HAMAP:MF_01379RefSeq:NP_039360.1
UniProt:P0C434PFAM:PF00124PRINTS:PR00256ScanProsite:PS00244InterPro:PSII_D1PANTHER:PTHR33149
PANTHER:PTHR33149:SF11MetaCyc:PWY-101InterPro:Photo_II_D1/D2_sfInterPro:Photo_RC_L/MUniProt:Q0JEM7SUPFAM:SSF81483
TIGRFAMs:TIGR01151TMHMM:TMhelixUniParc:UPI00001325F4RefSeq:YP_009305284.1SEG:seg:
Description
psbAPSII 32kDa protein
Coordinates
chrPt:-:82..1143
Molecular Weight (calculated)
38964.9 Da
IEP (calculated)
5.079
GRAVY (calculated)
0.361
Length
353 amino acids
Sequence
(BLAST)
001: MTAILERRES TSLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAALEVPS LNG
Best Arabidopsis Sequence Match ( ATCG00020.1 )
(BLAST)
001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG
Arabidopsis Description
PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.