Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0058g01080.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 10.77 | 71.79 |
| TraesCS5A01G103300.1 | Wheat | extracellular | 27.31 | 51.82 |
| PGSC0003DMT400041003 | Potato | vacuole | 28.46 | 41.81 |
| KRH57629 | Soybean | cytosol | 15.77 | 37.27 |
| HORVU6Hr1G046820.1 | Barley | cytosol, mitochondrion, plasma membrane, vacuole | 26.15 | 34.52 |
| ATCG00020.1 | Thale cress | cytosol, plasma membrane, vacuole | 42.69 | 31.44 |
| CAA34007 | Rice | extracellular, plasma membrane | 42.69 | 31.44 |
| CDY07595 | Canola | plastid | 42.69 | 31.44 |
| Zm00001d000417_P001 | Maize | plastid | 42.69 | 31.44 |
| TraesCS1D01G071400.1 | Wheat | cytosol, mitochondrion, plasma membrane, vacuole | 26.92 | 24.65 |
| Solyc02g010610.1.1 | Tomato | cytosol | 3.08 | 12.7 |
| Solyc11g056340.1.1 | Tomato | endoplasmic reticulum | 3.08 | 12.7 |
Protein Annotations
| MapMan:35.1 | UniProt:A0A1D6L5S1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0006091 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009772 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0019684 | GO:GO:0045156 | InterPro:IPR036854 | ProteinID:ONM09651.1 | PFAM:PF00124 |
| PANTHER:PTHR33149 | PANTHER:PTHR33149:SF11 | InterPro:Photo_II_D1/D2_sf | InterPro:Photo_RC_L/M | SUPFAM:SSF81483 | TMHMM:TMhelix |
| UniParc:UPI000843ED72 | EnsemblPlantsGene:Zm00001d034153 | EnsemblPlants:Zm00001d034153_P001 | EnsemblPlants:Zm00001d034153_T001 | SEG:seg | : |
Description
Photosystem II protein D1
Coordinates
chr1:-:285223932..285225231
Molecular Weight (calculated)
28228.3 Da
IEP (calculated)
5.589
GRAVY (calculated)
0.382
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVEWVSRLN GHEVAGRVAS TENRLYIGWF GVLMIPTLLT TTSVFIIAFI AAPPVDIDGI HEPVSGSLLY GNNIISGAII STSAAIGLYF YPIWEAASVD
101: EWLYNSGPYE LIIPVVASLG RRPIDLPLAS IFKSMMISVP SKRLNVGWQL DLFTIGSYVY VSSQSLDSKP WIDDMPSSGL NTCQPCGGCF TFDAGVGGSV
201: DVRRVTSLSL SSLDLRILLN PLSHLAELCV VDLRGNHLNS TFDTLIRAPE KALKIKGHIL
101: EWLYNSGPYE LIIPVVASLG RRPIDLPLAS IFKSMMISVP SKRLNVGWQL DLFTIGSYVY VSSQSLDSKP WIDDMPSSGL NTCQPCGGCF TFDAGVGGSV
201: DVRRVTSLSL SSLDLRILLN PLSHLAELCV VDLRGNHLNS TFDTLIRAPE KALKIKGHIL
001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG
Arabidopsis Description
PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.