Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH57629 | Soybean | cytosol | 64.1 | 22.73 |
| TraesCS5A01G103300.1 | Wheat | extracellular | 66.67 | 18.98 |
| PGSC0003DMT400041003 | Potato | vacuole | 71.79 | 15.82 |
| HORVU6Hr1G046820.1 | Barley | cytosol, mitochondrion, plasma membrane, vacuole | 69.23 | 13.71 |
| Zm00001d034153_P001 | Maize | cytosol | 71.79 | 10.77 |
| TraesCS1D01G071400.1 | Wheat | cytosol, mitochondrion, plasma membrane, vacuole | 71.79 | 9.86 |
| ATCG00020.1 | Thale cress | cytosol, plasma membrane, vacuole | 74.36 | 8.22 |
| CAA34007 | Rice | extracellular, plasma membrane | 74.36 | 8.22 |
| CDY07595 | Canola | plastid | 74.36 | 8.22 |
| VIT_13s0019g02630.t01 | Wine grape | cytosol, plasma membrane | 74.36 | 4.24 |
| Solyc02g010610.1.1 | Tomato | cytosol | 2.56 | 1.59 |
| Solyc11g056340.1.1 | Tomato | endoplasmic reticulum | 2.56 | 1.59 |
| VIT_11s0052g01680.t01 | Wine grape | extracellular, vacuole | 2.56 | 1.16 |
Protein Annotations
| ArrayExpress:VIT_08s0058g01080 | EMBL:FN594967 | EnsemblPlants:VIT_08s0058g01080.t01 | EnsemblPlantsGene:VIT_08s0058g01080 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009772 | GO:GO:0009987 | GO:GO:0015979 |
| GO:GO:0019684 | GO:GO:0045156 | InterPro:IPR036854 | InterPro:Photo_II_D1/D2_sf | ProteinID:CBI18056 | ProteinID:CBI18056.3 |
| SUPFAM:SSF81483 | TMHMM:TMhelix | UniParc:UPI0001BE13F8 | UniProt:D7SR11 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr8:-:10435563..10435682
Molecular Weight (calculated)
4255.4 Da
IEP (calculated)
3.875
GRAVY (calculated)
1.503
Length
39 amino acids
Sequence
(BLAST)
(BLAST)
1: MIPTLLTATS VFIIAFITAP PIDIDGIHEL VFGFLLLQL
001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG
Arabidopsis Description
PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.