Factsheet for VIT_13s0019g02630.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane

Predictor Summary:

nucleus 1
plastid 2
cytosol 1
extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0052g01680.t01	Wine grape	extracellular, vacuole	12.28	97.67
VIT_08s0058g01080.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	4.24	74.36

Protein Annotations

MapMan:1.1.1.2.1.1	Gene3D:1.20.85.10	EntrezGene:4025118	wikigene:4025118	ProteinID:ABE47514	ProteinID:ABE47514.1
ProteinID:ADN05198	ProteinID:ADN05198.1	ProteinID:ADN05199	ProteinID:ADN05199.1	ProteinID:ADN05200	ProteinID:ADN05200.1
ProteinID:ADN05201	ProteinID:ADN05201.1	ProteinID:ADN05202	ProteinID:ADN05202.1	ProteinID:ADN05203	ProteinID:ADN05203.1
ProteinID:ADN05204	ProteinID:ADN05204.1	ProteinID:ADN05205	ProteinID:ADN05205.1	ProteinID:ADN05206	ProteinID:ADN05206.1
ProteinID:ADN05207	ProteinID:ADN05207.1	ProteinID:ADN05208	ProteinID:ADN05208.1	ProteinID:ADN05209	ProteinID:ADN05209.1
ProteinID:ADN05210	ProteinID:ADN05210.1	ProteinID:ADN05211	ProteinID:ADN05211.1	ProteinID:ADN05212	ProteinID:ADN05212.1
ProteinID:ADN05213	ProteinID:ADN05213.1	EMBL:AM437979	EMBL:AM481952	EMBL:AM487447	ProteinID:CAN62909
ProteinID:CAN62909.1	ProteinID:CAN66539	ProteinID:CAN66539.1	ProteinID:CAN73044	ProteinID:CAN73044.1	ProteinID:CCB56290.1
ncoils:Coil	EMBL:DQ424856	UniProt:F6HNS1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006091	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009507	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009635
GO:GO:0009772	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0016491	GO:GO:0016682	GO:GO:0018298	GO:GO:0019538	GO:GO:0019684	GO:GO:0045156
GO:GO:0046872	GO:GO:0055114	EMBL:HQ108320	EMBL:HQ108321	EMBL:HQ108322	EMBL:HQ108323
EMBL:HQ108324	EMBL:HQ108325	EMBL:HQ108326	EMBL:HQ108327	EMBL:HQ108328	EMBL:HQ108329
EMBL:HQ108330	EMBL:HQ108331	EMBL:HQ108332	EMBL:HQ108333	EMBL:HQ108334	EMBL:HQ108335
InterPro:IPR036854	HAMAP:MF_01379	PFAM:PF00124	PRINTS:PR00256	ScanProsite:PS00244	InterPro:PSII_D1
PANTHER:PTHR33149	PANTHER:PTHR33149:SF11	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483	TIGRFAMs:TIGR01151
TMHMM:TMhelix	UniParc:UPI0002107FD4	ArrayExpress:VIT_13s0019g02630	EnsemblPlantsGene:VIT_13s0019g02630	EnsemblPlants:VIT_13s0019g02630.t01	unigene:Vvi.24478
EntrezGene:psbA	wikigene:psbA	SEG:seg	:	:	:

Description

Photosystem II protein D1 [Source:UniProtKB/TrEMBL;Acc:F6HNS1]

Coordinates

chr13:-:3884948..3890320

Molecular Weight (calculated)

73851.5 Da

IEP (calculated)

6.104

GRAVY (calculated)

0.333

Length

684 amino acids

Sequence
(BLAST)

001: MTVILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANAGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS INTEAKWFMI ESQRHSFHLV DPSPIEQVPS EPWDWHCLTA KTEMMTFSFA
401: LLFFIGGLLL LHFLKKKNFS RDIFHANSLS LDRTLFFFLF LLIIIHNIHF TVGFCDCNPR ELILSSQSLI AXXXXXXXXX XXXXXXXXXX XXXXXXXXXA
501: DIINRANLGM EVMHERNAHN FPLDLAAVEA PSINTEAKWF MIESQRHSFH LVDPSPIEQV PSEPWDWHCL TAKTEMMTFS FALLFFIGGL LLLHFLKKKN
601: FSRDIFHANS LSLDRTLFFF LFLLIIIHNI HFTVGFCDCN PLKSLGALSE GTMDRELFLA VRLSSEGVGG LGLGYRVNWI FCCI

Best Arabidopsis Sequence Match ( ATCG00020.1 )
(BLAST)

001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG

Arabidopsis Description

PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
SUBAcon: [cytosol,plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.