Factsheet for HORVU6Hr1G046820.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, vacuole, cytosol

Predictor Summary:

mitochondrion 2
plasma membrane 1
cytosol 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G001280.1
HORVU0Hr1G024720.1
HORVU2Hr1G016740.4
HORVU3Hr1G013690.6
HORVU3Hr1G038010.1
HORVU3Hr1G079210.4
HORVU4Hr1G026290.3
HORVU5Hr1G004630.2
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G044710.4
HORVU6Hr1G046820.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00020.1	HORVU3Hr1G013690.6	AT2G28800.1	15988575
ATCG00020.1	HORVU0Hr1G001280.1	AT2G41090.1	17360592
ATCG00020.1	HORVU2Hr1G016740.4	AT2G41090.1	17360592
ATCG00020.1	HORVU3Hr1G038010.1	AT2G41090.1	17360592
ATCG00020.1	HORVU3Hr1G079210.4	AT2G41090.1	17360592
ATCG00020.1	HORVU4Hr1G026290.3	AT2G41090.1	17360592
ATCG00020.1	HORVU5Hr1G014060.1	AT2G41090.1	17360592
ATCG00020.1	HORVU5Hr1G014070.2	AT2G41090.1	17360592
ATCG00020.1	HORVU5Hr1G044710.4	AT2G41090.1	17360592
ATCG00020.1	HORVU0Hr1G001280.1	AT2G41100.1	17360592
ATCG00020.1	HORVU2Hr1G016740.4	AT2G41100.1	17360592
ATCG00020.1	HORVU3Hr1G038010.1	AT2G41100.1	17360592
ATCG00020.1	HORVU3Hr1G079210.4	AT2G41100.1	17360592
ATCG00020.1	HORVU4Hr1G026290.3	AT2G41100.1	17360592
ATCG00020.1	HORVU5Hr1G014060.1	AT2G41100.1	17360592
ATCG00020.1	HORVU5Hr1G014070.2	AT2G41100.1	17360592
ATCG00020.1	HORVU5Hr1G044710.4	AT2G41100.1	17360592
ATCG00020.1	HORVU0Hr1G001280.1	AT5G21274.1	17360592
ATCG00020.1	HORVU2Hr1G016740.4	AT5G21274.1	17360592
ATCG00020.1	HORVU3Hr1G038010.1	AT5G21274.1	17360592
ATCG00020.1	HORVU3Hr1G079210.4	AT5G21274.1	17360592
ATCG00020.1	HORVU4Hr1G026290.3	AT5G21274.1	17360592
ATCG00020.1	HORVU5Hr1G014060.1	AT5G21274.1	17360592
ATCG00020.1	HORVU5Hr1G014070.2	AT5G21274.1	17360592
ATCG00020.1	HORVU5Hr1G044710.4	AT5G21274.1	17360592
ATCG00020.1	HORVU0Hr1G024720.1	ATCG00020.1	15988575
ATCG00020.1	HORVU5Hr1G004630.2	ATCG00020.1	15988575
ATCG00020.1	HORVU6Hr1G046820.1	ATCG00020.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g056340.1.1	Tomato	endoplasmic reticulum	26.9	84.13
Solyc02g010610.1.1	Tomato	cytosol	23.86	74.6
VIT_08s0058g01080.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	13.71	69.23
KRH57629	Soybean	cytosol	26.9	48.18
HORVU5Hr1G004630.2	Barley	plasma membrane	79.19	47.42
HORVU2Hr1G121820.5	Barley	extracellular, mitochondrion, plasma membrane, vacuole	80.71	45.04
AGP50735	Barley	extracellular, mitochondrion, plasma membrane, vacuole	80.2	44.76
CAA34007	Rice	extracellular, plasma membrane	79.7	44.48
ATCG00020.1	Thale cress	cytosol, plasma membrane, vacuole	79.19	44.19
HORVU2Hr1G070570.1	Barley	extracellular, mitochondrion, plasma membrane, vacuole	79.19	44.19
CDY07595	Canola	plastid	79.19	44.19
HORVU0Hr1G024720.1	Barley	golgi, mitochondrion	40.1	38.35
TraesCS5A01G103300.1	Wheat	extracellular	22.84	32.85
Zm00001d034153_P001	Maize	cytosol	34.52	26.15
HORVU2Hr1G121360.1	Barley	extracellular, mitochondrion, plastid, vacuole	4.06	13.11
HORVU2Hr1G043240.1	Barley	extracellular	1.52	7.69
HORVU3Hr1G004790.1	Barley	cytosol	0.51	1.79
HORVU1Hr1G017870.1	Barley	extracellular, vacuole	0.51	1.33

Protein Annotations

Gene3D:1.20.85.10	MapMan:35.1	UniProt:A0A287U3B3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0019684	GO:GO:0045156	EnsemblPlantsGene:HORVU6Hr1G046820	EnsemblPlants:HORVU6Hr1G046820.1
InterPro:IPR036854	PFAM:PF00124	ScanProsite:PS00244	PANTHER:PTHR33149	PANTHER:PTHR33149:SF11	InterPro:Photo_II_D1/D2_sf
InterPro:Photo_RC_L/M	SUPFAM:SSF81483	TMHMM:TMhelix	UniParc:UPI000B46B01D	SEG:seg	:

Description

No Description!

Coordinates

chrchr6H:-:275450263..275451288

Molecular Weight (calculated)

21921.4 Da

IEP (calculated)

4.526

GRAVY (calculated)

0.317

Length

197 amino acids

Sequence
(BLAST)

001: MTAILERRES TSVWGRFCNW ITSTKNRLYI GWFGVLMIPT LLTTTSIFII AFIPAPPIDI DGIHEPLSGT IIPTFAAIGL HGYPVREDAS IDEYLCSFNF
101: MIVFQEEDNI LMHPFHMLGV AAVFGGSLFS AMHGSLVTSS LIGETTENES ANEGYKFGQE EETYNIVDAH GYFGRLILQY ASLTTLVLHT SSWLLSL

Best Arabidopsis Sequence Match ( ATCG00020.1 )
(BLAST)

001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG

Arabidopsis Description

PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.