CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole, plasma membrane, mitochondrion

Predictor Summary:

plastid 3
extracellular 2
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion, plasma membrane, vacuole
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G121360.1	Barley	extracellular, mitochondrion, plastid, vacuole	17.28	100.0
HORVU2Hr1G121820.5	Barley	extracellular, mitochondrion, plasma membrane, vacuole	99.15	99.15
HORVU2Hr1G070570.1	Barley	extracellular, mitochondrion, plasma membrane, vacuole	98.3	98.3
TraesCS1D01G179900.1	Wheat	plastid	97.73	97.73
HORVU5Hr1G004630.2	Barley	plasma membrane	90.93	97.57
HORVU2Hr1G043240.1	Barley	extracellular	10.76	97.44
HORVU1Hr1G017870.1	Barley	extracellular, vacuole	20.68	97.33
HORVU3Hr1G004790.1	Barley	cytosol	15.01	94.64
Solyc01g048590.1.1	Tomato	extracellular, plasma membrane	20.68	87.95
HORVU0Hr1G024720.1	Barley	golgi, mitochondrion	48.44	83.01
HORVU6Hr1G046820.1	Barley	cytosol, mitochondrion, plasma membrane, vacuole	44.76	80.2
PGSC0003DMT400046004	Potato	extracellular, vacuole	14.45	61.45
Solyc05g016120.1.1	Tomato	endoplasmic reticulum, plasma membrane	39.38	59.66
Solyc03g013500.1.1	Tomato	extracellular, vacuole	13.88	58.33

Protein Annotations

MapMan:1.1.1.2.1.1	Gene3D:1.20.85.10	EntrezGene:4525096	EnsemblPlants:AGP50735	EnsemblPlantsGene:AGP50735	ProteinID:AGP50735
ProteinID:AGP50735.1	ProteinID:AMA20226.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009635	GO:GO:0009772	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0016491	GO:GO:0016682
GO:GO:0018298	GO:GO:0019538	GO:GO:0019684	GO:GO:0045156	GO:GO:0046872	GO:GO:0055114
InterPro:IPR036854	ENA:KC912687.1:CDS:complement(82..1143)	HAMAP:MF_01379	PFAM:PF00124	PRINTS:PR00256	ScanProsite:PS00244
InterPro:PSII_D1	PANTHER:PTHR33149	PANTHER:PTHR33149:SF11	MetaCyc:PWY-101	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M
GO:S4Z1V8	UniProt:S4Z1V8	SUPFAM:SSF81483	TIGRFAMs:TIGR01151	TMHMM:TMhelix	UniParc:UPI00001325EB
RefSeq:YP_874633.1	SEG:seg	:	:	:	:

Description

psbAphotosystem II protein D1

Coordinates

chrPt:-:82..1143

Molecular Weight (calculated)

38906.8 Da

IEP (calculated)

5.079

GRAVY (calculated)

0.373

Length

353 amino acids

Sequence
(BLAST)

001: MTAILERRES TSLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYKFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEVPA ING

Best Arabidopsis Sequence Match ( ATCG00020.1 )
(BLAST)

001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG

Arabidopsis Description

PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
SUBAcon: [cytosol,plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.