Factsheet for HORVU5Hr1G004630.2

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plasma membrane 2
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plasma membrane
MultiLoc:	plasma membrane
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G001280.1
HORVU0Hr1G024720.1
HORVU2Hr1G016740.4
HORVU3Hr1G013690.6
HORVU3Hr1G038010.1
HORVU3Hr1G079210.4
HORVU4Hr1G026290.3
HORVU5Hr1G004630.2
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G044710.4
HORVU6Hr1G046820.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00020.1	HORVU3Hr1G013690.6	AT2G28800.1	15988575
ATCG00020.1	HORVU0Hr1G001280.1	AT2G41090.1	17360592
ATCG00020.1	HORVU2Hr1G016740.4	AT2G41090.1	17360592
ATCG00020.1	HORVU3Hr1G038010.1	AT2G41090.1	17360592
ATCG00020.1	HORVU3Hr1G079210.4	AT2G41090.1	17360592
ATCG00020.1	HORVU4Hr1G026290.3	AT2G41090.1	17360592
ATCG00020.1	HORVU5Hr1G014060.1	AT2G41090.1	17360592
ATCG00020.1	HORVU5Hr1G014070.2	AT2G41090.1	17360592
ATCG00020.1	HORVU5Hr1G044710.4	AT2G41090.1	17360592
ATCG00020.1	HORVU0Hr1G001280.1	AT2G41100.1	17360592
ATCG00020.1	HORVU2Hr1G016740.4	AT2G41100.1	17360592
ATCG00020.1	HORVU3Hr1G038010.1	AT2G41100.1	17360592
ATCG00020.1	HORVU3Hr1G079210.4	AT2G41100.1	17360592
ATCG00020.1	HORVU4Hr1G026290.3	AT2G41100.1	17360592
ATCG00020.1	HORVU5Hr1G014060.1	AT2G41100.1	17360592
ATCG00020.1	HORVU5Hr1G014070.2	AT2G41100.1	17360592
ATCG00020.1	HORVU5Hr1G044710.4	AT2G41100.1	17360592
ATCG00020.1	HORVU0Hr1G001280.1	AT5G21274.1	17360592
ATCG00020.1	HORVU2Hr1G016740.4	AT5G21274.1	17360592
ATCG00020.1	HORVU3Hr1G038010.1	AT5G21274.1	17360592
ATCG00020.1	HORVU3Hr1G079210.4	AT5G21274.1	17360592
ATCG00020.1	HORVU4Hr1G026290.3	AT5G21274.1	17360592
ATCG00020.1	HORVU5Hr1G014060.1	AT5G21274.1	17360592
ATCG00020.1	HORVU5Hr1G014070.2	AT5G21274.1	17360592
ATCG00020.1	HORVU5Hr1G044710.4	AT5G21274.1	17360592
ATCG00020.1	HORVU0Hr1G024720.1	ATCG00020.1	15988575
ATCG00020.1	HORVU5Hr1G004630.2	ATCG00020.1	15988575
ATCG00020.1	HORVU6Hr1G046820.1	ATCG00020.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G121360.1	Barley	extracellular, mitochondrion, plastid, vacuole	18.24	98.36
HORVU2Hr1G043240.1	Barley	extracellular	11.55	97.44
PGSC0003DMT400041003	Potato	vacuole	51.06	94.92
AGP50735	Barley	extracellular, mitochondrion, plasma membrane, vacuole	97.57	90.93
ATCG00020.1	Thale cress	cytosol, plasma membrane, vacuole	96.96	90.37
CDY07595	Canola	plastid	96.96	90.37
HORVU2Hr1G121820.5	Barley	extracellular, mitochondrion, plasma membrane, vacuole	96.66	90.08
HORVU2Hr1G070570.1	Barley	extracellular, mitochondrion, plasma membrane, vacuole	95.74	89.24
Solyc11g056340.1.1	Tomato	endoplasmic reticulum	17.02	88.89
TraesCS1D01G071400.1	Wheat	cytosol, mitochondrion, plasma membrane, vacuole	72.04	83.45
HORVU0Hr1G024720.1	Barley	golgi, mitochondrion	50.76	81.07
HORVU6Hr1G046820.1	Barley	cytosol, mitochondrion, plasma membrane, vacuole	47.42	79.19
Solyc02g010610.1.1	Tomato	cytosol	14.89	77.78
HORVU1Hr1G017870.1	Barley	extracellular, vacuole	13.98	61.33
HORVU3Hr1G004790.1	Barley	cytosol	7.9	46.43

Protein Annotations

MapMan:1.1.1.2.1.1	Gene3D:1.20.85.10	UniProt:A0A287Q7T9	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009523	GO:GO:0009579	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0019684	GO:GO:0045156	GO:GO:0046872	GO:GO:0055114
EnsemblPlantsGene:HORVU5Hr1G004630	EnsemblPlants:HORVU5Hr1G004630.2	InterPro:IPR036854	HAMAP:MF_01379	PFAM:PF00124	PRINTS:PR00256
InterPro:PSII_D1	PANTHER:PTHR33149	PANTHER:PTHR33149:SF11	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483
TIGRFAMs:TIGR01151	TMHMM:TMhelix	UniParc:UPI000B486D30	SEG:seg	:	:

Description

Photosystem II protein D1 [Source:UniProtKB/TrEMBL;Acc:A0A287Q7T9]

Coordinates

chrchr5H:+:8249084..8250504

Molecular Weight (calculated)

36467.0 Da

IEP (calculated)

5.524

GRAVY (calculated)

0.428

Length

329 amino acids

Sequence
(BLAST)

001: MTAILERRES TSLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSSS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYEIIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSVMHGSLVT SSLIRETTEN ESANEGYKFG QEEETYNIVA AHGYFGRLIF QYACFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRATLVWK

Best Arabidopsis Sequence Match ( ATCG00020.1 )
(BLAST)

001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG

Arabidopsis Description

PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.