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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:
  • plastid 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • plasma membrane 2
  • golgi 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY07595 Canola plastid 99.72 99.72
CAA34007 Rice extracellular, plasma membrane 98.58 98.58
PGSC0003DMT400041003 Potato vacuole 48.73 97.18
HORVU5Hr1G004630.2 Barley plasma membrane 90.37 96.96
KRH17937 Soybean mitochondrion, nucleus 72.8 94.83
Solyc11g056340.1.1 Tomato endoplasmic reticulum 16.43 92.06
TraesCS1D01G071400.1 Wheat cytosol, mitochondrion, plasma membrane, vacuole 73.94 91.9
TraesCS5A01G103300.1 Wheat extracellular 35.41 91.24
HORVU0Hr1G024720.1 Barley golgi, mitochondrion 48.16 82.52
HORVU6Hr1G046820.1 Barley cytosol, mitochondrion, plasma membrane, vacuole 44.19 79.19
Solyc02g010610.1.1 Tomato cytosol 13.88 77.78
VIT_08s0058g01080.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 8.22 74.36
KRH57629 Soybean cytosol 17.56 56.36
Zm00001d034153_P001 Maize cytosol 31.44 42.69
Protein Annotations
MapMan:1.1.1.2.1.1Gene3D:1.20.85.10PDB:5MDXEntrezGene:844802UniProt:A0A1B1W4S7ProteinID:ANW47771.1
ArrayExpress:ATCG00020EnsemblPlantsGene:ATCG00020RefSeq:ATCG00020TAIR:ATCG00020RefSeq:ATCG00020-TAIR-GEnsemblPlants:ATCG00020.1
TAIR:ATCG00020.1ProteinID:BAA84365.1ProteinID:CAA56270.1GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0005506GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0006091GO:GO:0006464GO:GO:0006950GO:GO:0008150GO:GO:0008152GO:GO:0009055
GO:GO:0009507GO:GO:0009523GO:GO:0009534GO:GO:0009535GO:GO:0009536GO:GO:0009579
GO:GO:0009635GO:GO:0009772GO:GO:0009987GO:GO:0010287GO:GO:0015979GO:GO:0016020
GO:GO:0016021GO:GO:0016168GO:GO:0016491GO:GO:0016682GO:GO:0018298GO:GO:0019538
GO:GO:0019684GO:GO:0045156GO:GO:0046872GO:GO:0055114InterPro:IPR036854HAMAP:MF_01379
RefSeq:NP_051039.1UniProt:P83755PFAM:PF00124PRINTS:PR00256ScanProsite:PS00244Symbol:PSBA
InterPro:PSII_D1PANTHER:PTHR33149PANTHER:PTHR33149:SF11InterPro:Photo_II_D1/D2_sfInterPro:Photo_RC_L/MSUPFAM:SSF81483
TIGRFAMs:TIGR01151TMHMM:TMhelixUniParc:UPI000006175BSEG:seg::
Description
PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
Coordinates
chrPt:-:383..1444
Molecular Weight (calculated)
38938.7 Da
IEP (calculated)
4.942
GRAVY (calculated)
0.334
Length
353 amino acids
Sequence
(BLAST)
001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.