Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
- golgi 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY07595 | Canola | plastid | 99.72 | 99.72 |
CAA34007 | Rice | extracellular, plasma membrane | 98.58 | 98.58 |
PGSC0003DMT400041003 | Potato | vacuole | 48.73 | 97.18 |
HORVU5Hr1G004630.2 | Barley | plasma membrane | 90.37 | 96.96 |
KRH17937 | Soybean | mitochondrion, nucleus | 72.8 | 94.83 |
Solyc11g056340.1.1 | Tomato | endoplasmic reticulum | 16.43 | 92.06 |
TraesCS1D01G071400.1 | Wheat | cytosol, mitochondrion, plasma membrane, vacuole | 73.94 | 91.9 |
TraesCS5A01G103300.1 | Wheat | extracellular | 35.41 | 91.24 |
HORVU0Hr1G024720.1 | Barley | golgi, mitochondrion | 48.16 | 82.52 |
HORVU6Hr1G046820.1 | Barley | cytosol, mitochondrion, plasma membrane, vacuole | 44.19 | 79.19 |
Solyc02g010610.1.1 | Tomato | cytosol | 13.88 | 77.78 |
VIT_08s0058g01080.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 8.22 | 74.36 |
KRH57629 | Soybean | cytosol | 17.56 | 56.36 |
Zm00001d034153_P001 | Maize | cytosol | 31.44 | 42.69 |
Protein Annotations
MapMan:1.1.1.2.1.1 | Gene3D:1.20.85.10 | PDB:5MDX | EntrezGene:844802 | UniProt:A0A1B1W4S7 | ProteinID:ANW47771.1 |
ArrayExpress:ATCG00020 | EnsemblPlantsGene:ATCG00020 | RefSeq:ATCG00020 | TAIR:ATCG00020 | RefSeq:ATCG00020-TAIR-G | EnsemblPlants:ATCG00020.1 |
TAIR:ATCG00020.1 | ProteinID:BAA84365.1 | ProteinID:CAA56270.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
GO:GO:0005506 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
GO:GO:0006091 | GO:GO:0006464 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 |
GO:GO:0009507 | GO:GO:0009523 | GO:GO:0009534 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 |
GO:GO:0009635 | GO:GO:0009772 | GO:GO:0009987 | GO:GO:0010287 | GO:GO:0015979 | GO:GO:0016020 |
GO:GO:0016021 | GO:GO:0016168 | GO:GO:0016491 | GO:GO:0016682 | GO:GO:0018298 | GO:GO:0019538 |
GO:GO:0019684 | GO:GO:0045156 | GO:GO:0046872 | GO:GO:0055114 | InterPro:IPR036854 | HAMAP:MF_01379 |
RefSeq:NP_051039.1 | UniProt:P83755 | PFAM:PF00124 | PRINTS:PR00256 | ScanProsite:PS00244 | Symbol:PSBA |
InterPro:PSII_D1 | PANTHER:PTHR33149 | PANTHER:PTHR33149:SF11 | InterPro:Photo_II_D1/D2_sf | InterPro:Photo_RC_L/M | SUPFAM:SSF81483 |
TIGRFAMs:TIGR01151 | TMHMM:TMhelix | UniParc:UPI000006175B | SEG:seg | : | : |
Description
PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
Coordinates
chrPt:-:383..1444
Molecular Weight (calculated)
38938.7 Da
IEP (calculated)
4.942
GRAVY (calculated)
0.334
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.