Factsheet for Solyc02g011990.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	plasma membrane

plastid: 20363867
plastid: 22908117
plastid: 26371478

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g013780.1.1	Tomato	cytosol, plastid	18.39	67.61
Solyc02g021290.1.1	Tomato	cytosol, nucleus	13.03	66.67
Solyc01g097530.1.1	Tomato	plasma membrane	24.52	59.81
Solyc01g048590.1.1	Tomato	extracellular, plasma membrane	16.48	51.81
Solyc12g039030.1.1	Tomato	endoplasmic reticulum	9.2	45.28
Solyc11g056340.1.1	Tomato	endoplasmic reticulum	9.58	39.68
Solyc02g010610.1.1	Tomato	cytosol	8.43	34.92
Solyc03g013500.1.1	Tomato	extracellular, vacuole	9.58	29.76
Solyc05g016120.1.1	Tomato	endoplasmic reticulum, plasma membrane	21.07	23.61
Solyc11g030830.1.1	Tomato	cytosol	6.13	17.39

Protein Annotations

Gene3D:1.20.85.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009635	GO:GO:0009772	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0016491	GO:GO:0016682
GO:GO:0018298	GO:GO:0019538	GO:GO:0019684	GO:GO:0045156	GO:GO:0046872	GO:GO:0055114
InterPro:IPR036854	UniProt:K4B4J8	PFAM:PF00124	PANTHER:PTHR33149	PANTHER:PTHR33149:SF11	InterPro:Photo_II_D1/D2_sf
InterPro:Photo_RC_L/M	SUPFAM:SSF81483	EnsemblPlantsGene:Solyc02g011990.1	EnsemblPlants:Solyc02g011990.1.1	TMHMM:TMhelix	UniParc:UPI0002768082

Description

No Description!

Coordinates

chr2:-:13823722..13825907

Molecular Weight (calculated)

29286.6 Da

IEP (calculated)

7.305

GRAVY (calculated)

0.366

Length

261 amino acids

Sequence
(BLAST)

001: MYFNTGRIHI NQLSNHSRDF MGYLSSARLN HSMMIHTLLT ATSVFIIAFI DACPADIDGI REPFSRFLLY ENNIISGAII PTSAAIAPVR SATTIFLIYP
101: IGQANFSDGM PLGISCTFNF MIVFQAEYNI LMHPFHMLGV ARVFDGSLFS ATYDAHGCFG LLIFQYASFN KSRSLHFFLA ARPVLGIWFT ALGISTMAFN
201: LNCFNFNQSV LDSQCRVINT WADIINRANL SMKVMHERNA NNFPLDLAAI EPHLQMDKIL T

Best Arabidopsis Sequence Match ( ATCG00020.1 )
(BLAST)

001: MTAILERRES ESLWGRFCNW ITSTENRLYI GWFGVLMIPT LLTATSVFII AFIAAPPVDI DGIREPVSGS LLYGNNIISG AIIPTSAAIG LHFYPIWEAA
101: SVDEWLYNGG PYELIVLHFL LGVACYMGRE WELSFRLGMR PWIAVAYSAP VAAATAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHML
201: GVAGVFGGSL FSAMHGSLVT SSLIRETTEN ESANEGYRFG QEEETYNIVA AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGIWFTALGI STMAFNLNGF
301: NFNQSVVDSQ GRVINTWADI INRANLGMEV MHERNAHNFP LDLAAVEAPS TNG

Arabidopsis Description

PSBAPhotosystem II protein D1 [Source:UniProtKB/Swiss-Prot;Acc:P83755]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.