Factsheet for Solyc09g055950.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 5
golgi 3
plasma membrane 4
endoplasmic reticulum 3
vacuole 3
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

plastid: 22908117
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc11g066110.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00270.1	Solyc11g066110.1.1	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G066830.2	Barley	extracellular	26.71	70.91
KRH54903	Soybean	plasma membrane	72.6	63.1
Solyc05g021190.1.1	Tomato	extracellular	29.45	48.31
HORVU4Hr1G066680.2	Barley	plasma membrane	80.14	39.53
VIT_12s0055g00080.t01	Wine grape	cytosol	44.52	38.92
ATCG00270.1	Thale cress	cytosol	82.88	34.28
TraesCS2B01G330700.1	Wheat	plastid	82.88	34.28
HORVU6Hr1G046850.1	Barley	cytosol	34.25	30.86
HORVU2Hr1G061990.1	Barley	cytosol	8.9	13.13
Solyc09g031730.1.1	Tomato	extracellular, vacuole	4.79	8.64
TraesCS2D01G572800.1	Wheat	extracellular, plasma membrane, vacuole	6.85	6.45
Solyc07g008990.1.1	Tomato	mitochondrion	3.42	5.88
Solyc08g065370.1.1	Tomato	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.20.85.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0016491	GO:GO:0018298	GO:GO:0019538	GO:GO:0019684
GO:GO:0045156	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036854	UniProt:K4CT90	PFAM:PF00124
PANTHER:PTHR33149	PANTHER:PTHR33149:SF8	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483	SignalP:SignalP-TM
EnsemblPlantsGene:Solyc09g055950.1	EnsemblPlants:Solyc09g055950.1.1	TMHMM:TMhelix	UniParc:UPI000276B15A	:	:

Description

No Description!

Coordinates

chr9:+:46262735..46263237

Molecular Weight (calculated)

16723.7 Da

IEP (calculated)

9.825

GRAVY (calculated)

0.699

Length

146 amino acids

Sequence
(BLAST)

001: MVYPWIVLAY SLLLLWGPEA QGDFTRWCQL GGLWTFVALH GAFGLIGFML RQFELARSVQ LRPYNAIAFS GPIAVFVSVF LIYPLGQSGW FFAPSFGVAA
101: IFRFILFFQG FHNWTLNPFH MMGVAGVLGG CFAMRHSWCY RRKYFI

Best Arabidopsis Sequence Match ( ATCG00270.1 )
(BLAST)

001: MTIALGKFTK DEKDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL

Arabidopsis Description

PSBDPhotosystem II D2 protein [Source:UniProtKB/Swiss-Prot;Acc:P56761]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.