CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
cytosol 1
extracellular 1
golgi 1
plasma membrane 3
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH24811
KRH29812

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00270.1	KRH24811	AT2G28800.1	15988575
ATCG00270.1	KRH29812	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g055950.1.1	Tomato	plastid	63.1	72.6
HORVU3Hr1G066830.2	Barley	extracellular	23.21	70.91
PGSC0003DMT400020261	Potato	extracellular, plasma membrane, vacuole	54.76	58.97
HORVU6Hr1G046850.1	Barley	cytosol	51.79	53.7
HORVU2Hr1G061990.1	Barley	cytosol	30.36	51.52
KRH76460	Soybean	cytosol	71.43	48.19
HORVU4Hr1G066680.2	Barley	plasma membrane	78.57	44.59
ATCG00270.1	Thale cress	cytosol	87.5	41.64
TraesCS2B01G330700.1	Wheat	plastid	87.5	41.64
TraesCS4A01G153100.1	Wheat	mitochondrion, plasma membrane	37.5	40.65
VIT_12s0055g00080.t01	Wine grape	cytosol	39.88	40.12
Solyc05g021190.1.1	Tomato	extracellular	16.67	31.46
KRH62235	Soybean	endoplasmic reticulum, extracellular, vacuole	0.0	0.0
PGSC0003DMT400074870	Potato	extracellular	0.0	0.0
TraesCS2D01G572800.1	Wheat	extracellular, plasma membrane, vacuole	0.0	0.0

Protein Annotations

Gene3D:1.20.85.10	MapMan:35.1	UniProt:A0A0R0JKA4	EMBL:ACUP02003595	EnsemblPlantsGene:GLYMA_06G217900	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009772
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0019684	GO:GO:0045156
InterPro:IPR036854	EnsemblPlants:KRH54903	ProteinID:KRH54903	ProteinID:KRH54903.1	PFAM:PF00124	PANTHER:PTHR33149
PANTHER:PTHR33149:SF7	MetaCyc:PWY-101	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483	TMHMM:TMhelix
UniParc:UPI0006ED70D2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:23308806..23310840

Molecular Weight (calculated)

18488.3 Da

IEP (calculated)

7.574

GRAVY (calculated)

0.551

Length

168 amino acids

Sequence
(BLAST)

001: MEGEKPAPTP LLTIQIALGG WFTGTTFVTS WYTHGLASSY LEGCNFLTAA VSTPANSLAH SLLLLWGPEA QGDFTRWCQL GGLWTFVALH GAFALIGFML
101: RQFELARSVQ LRPYNAIAFS GPIAVFVSVF LIYPLGQSGW FFAPSFGVAA IFRFVLFFQG FHNWTYTG

Best Arabidopsis Sequence Match ( ATCG00270.1 )
(BLAST)

001: MTIALGKFTK DEKDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL

Arabidopsis Description

PSBDPhotosystem II D2 protein [Source:UniProtKB/Swiss-Prot;Acc:P56761]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.