Factsheet for ATCG00270.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G021000.1	Wheat	cytosol, plasma membrane, vacuole	96.6	96.6
TraesCS2B01G330700.1	Wheat	plastid	96.32	96.32
HORVU2Hr1G121790.2	Barley	cytosol, plasma membrane, vacuole	95.18	95.18
KRH62235	Soybean	endoplasmic reticulum, extracellular, vacuole	39.94	94.63
KRH54903	Soybean	plasma membrane	41.64	87.5
KRH76460	Soybean	cytosol	60.34	85.54
PGSC0003DMT400020261	Potato	extracellular, plasma membrane, vacuole	37.68	85.26
TraesCS4A01G153100.1	Wheat	mitochondrion, plasma membrane	37.39	85.16
Solyc09g055950.1.1	Tomato	plastid	34.28	82.88
Solyc05g021190.1.1	Tomato	extracellular	19.55	77.53
VIT_12s0055g00080.t01	Wine grape	cytosol	28.61	60.48
PGSC0003DMT400016094	Potato	endoplasmic reticulum, extracellular, vacuole	18.98	55.83
PGSC0003DMT400074870	Potato	extracellular	14.45	35.42

Protein Annotations

MapMan:1.1.1.2.1.2	Gene3D:1.20.85.10	PDB:5MDX	EntrezGene:844775	UniProt:A0A1B1W4U0	ProteinID:ANW47785.1
ArrayExpress:ATCG00270	EnsemblPlantsGene:ATCG00270	RefSeq:ATCG00270	TAIR:ATCG00270	RefSeq:ATCG00270-TAIR-G	EnsemblPlants:ATCG00270.1
TAIR:ATCG00270.1	ProteinID:BAA84380.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009523
GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009772	GO:GO:0009987
GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0016491
GO:GO:0018298	GO:GO:0019538	GO:GO:0019684	GO:GO:0045156	GO:GO:0046872	GO:GO:0055114
InterPro:IPR036854	HAMAP:MF_01383	RefSeq:NP_051054.1	UniProt:P56761	PFAM:PF00124	PRINTS:PR00256
ScanProsite:PS00244	Symbol:PSBD	InterPro:PSII_PsbD/D2	PANTHER:PTHR33149	PANTHER:PTHR33149:SF8	InterPro:Photo_II_D1/D2_sf
InterPro:Photo_RC_L/M	SUPFAM:SSF81483	TIGRFAMs:TIGR01152	TMHMM:TMhelix	UniParc:UPI000013263C	SEG:seg

Description

PSBDPhotosystem II D2 protein [Source:UniProtKB/Swiss-Prot;Acc:P56761]

Coordinates

chrPt:+:32711..33772

Molecular Weight (calculated)

39549.6 Da

IEP (calculated)

5.553

GRAVY (calculated)

0.372

Length

353 amino acids

Sequence
(BLAST)

001: MTIALGKFTK DEKDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.