Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400001063 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| ATCG00270.1 | PGSC0003DMT400001063 | AT2G28800.1 | 15988575 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH62235 | Soybean | endoplasmic reticulum, extracellular, vacuole | 53.33 | 42.95 |
| TraesCS2D01G572800.1 | Wheat | extracellular, plasma membrane, vacuole | 51.67 | 40.0 |
| PGSC0003DMT400074870 | Potato | extracellular | 36.67 | 30.56 |
| HORVU4Hr1G066680.2 | Barley | plasma membrane | 52.5 | 21.28 |
| PGSC0003DMT400020261 | Potato | extracellular, plasma membrane, vacuole | 26.67 | 20.51 |
| ATCG00270.1 | Thale cress | cytosol | 55.83 | 18.98 |
| TraesCS2B01G330700.1 | Wheat | plastid | 55.0 | 18.7 |
| PGSC0003DMT400044462 | Potato | cytosol | 42.5 | 18.61 |
| HORVU2Hr1G061990.1 | Barley | cytosol | 0.0 | 0.0 |
| HORVU3Hr1G066830.2 | Barley | extracellular | 0.0 | 0.0 |
| HORVU6Hr1G046850.1 | Barley | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:35.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0006091 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009772 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0019684 | GO:GO:0045156 | InterPro:IPR036854 | UniProt:M1A733 | PFAM:PF00124 | EnsemblPlantsGene:PGSC0003DMG400006291 |
| PGSC:PGSC0003DMG400006291 | EnsemblPlants:PGSC0003DMT400016094 | PANTHER:PTHR33149 | PANTHER:PTHR33149:SF7 | InterPro:Photo_II_D1/D2_sf | InterPro:Photo_RC_L/M |
| SUPFAM:SSF81483 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000294D9A1 | SEG:seg | : |
Description
Photosystem II D2 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006291]
Coordinates
chr1:-:60334192..60334554
Molecular Weight (calculated)
13391.2 Da
IEP (calculated)
5.573
GRAVY (calculated)
0.253
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MMGVAGVLGT ALLCAIHGAT VEKTLFEDGD GAKIFRAFNP TQAEETYSMV TANRLWSQIF GVAFPINVGY IFFIVICTSN RFMDECSWNS RSSSEPYIYI
101: YIYDTSLLKL TLHHGVMEGK
101: YIYDTSLLKL TLHHGVMEGK
001: MTIALGKFTK DEKDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL
Arabidopsis Description
PSBDPhotosystem II D2 protein [Source:UniProtKB/Swiss-Prot;Acc:P56761]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.