Factsheet for TraesCS2B01G330700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

plastid: 22056444
plastid: 22160430
golgi: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 22056444 doi

Q Meng, L Rao, X Xiang, C Zhou, X Zhang, Y Pan

College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G075700.1
TraesCS3B01G089800.1
TraesCS3D01G075800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00270.1	TraesCS3A01G075700.1	AT2G28800.1	15988575
ATCG00270.1	TraesCS3B01G089800.1	AT2G28800.1	15988575
ATCG00270.1	TraesCS3D01G075800.1	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G021000.1	Wheat	cytosol, plasma membrane, vacuole	98.02	98.02
HORVU2Hr1G121790.2	Barley	cytosol, plasma membrane, vacuole	96.88	96.88
ATCG00270.1	Thale cress	cytosol	96.32	96.32
KRH62235	Soybean	endoplasmic reticulum, extracellular, vacuole	38.81	91.95
KRH54903	Soybean	plasma membrane	41.64	87.5
TraesCS4A01G153100.1	Wheat	mitochondrion, plasma membrane	37.68	85.81
PGSC0003DMT400020261	Potato	extracellular, plasma membrane, vacuole	37.68	85.26
KRH76460	Soybean	cytosol	59.49	84.34
Solyc09g055950.1.1	Tomato	plastid	34.28	82.88
Solyc05g021190.1.1	Tomato	extracellular	19.55	77.53
VIT_12s0055g00080.t01	Wine grape	cytosol	26.91	56.89
PGSC0003DMT400016094	Potato	endoplasmic reticulum, extracellular, vacuole	18.7	55.0
PGSC0003DMT400074870	Potato	extracellular	14.16	34.72

Protein Annotations

MapMan:1.1.1.2.1.2	Gene3D:1.20.85.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009523	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009772
GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0019684	GO:GO:0045156
InterPro:IPR036854	HAMAP:MF_01383	PFAM:PF00124	PRINTS:PR00256	ScanProsite:PS00244	InterPro:PSII_PsbD/D2
PANTHER:PTHR33149	PANTHER:PTHR33149:SF8	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483	TIGRFAMs:TIGR01152
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS2B01G330700	EnsemblPlants:TraesCS2B01G330700.1	TIGR:cd09288	SEG:seg	:

Description

No Description!

Coordinates

chr2B:+:474902402..474903463

Molecular Weight (calculated)

39601.6 Da

IEP (calculated)

5.787

GRAVY (calculated)

0.347

Length

353 amino acids

Sequence
(BLAST)

001: MTIALGRIPK EENDLFDTMD DWLRRDRFFF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWTFVALHGA FALIGFMLRQ FELARSVQLR PYNAISFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSAIGVVGL ALNLRAYDFV
301: SQEIHAAEDP EFETFYTKNI ILNKGIRAWM AAQDQPHENL IFPEEVLPRG NAL

Best Arabidopsis Sequence Match ( ATCG00270.1 )
(BLAST)

001: MTIALGKFTK DEKDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL

Arabidopsis Description

PSBDPhotosystem II D2 protein [Source:UniProtKB/Swiss-Prot;Acc:P56761]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.