Factsheet for PGSC0003DMT400074870

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001063

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00270.1	PGSC0003DMT400001063	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016094	Potato	endoplasmic reticulum, extracellular, vacuole	30.56	36.67
Solyc05g021190.1.1	Tomato	extracellular	22.22	35.96
TraesCS2D01G572800.1	Wheat	extracellular, plasma membrane, vacuole	35.42	32.9
PGSC0003DMT400020261	Potato	extracellular, plasma membrane, vacuole	21.53	19.87
HORVU4Hr1G066680.2	Barley	plasma membrane	31.94	15.54
PGSC0003DMT400044462	Potato	cytosol	28.47	14.96
ATCG00270.1	Thale cress	cytosol	35.42	14.45
TraesCS2B01G330700.1	Wheat	plastid	34.72	14.16
VIT_12s0055g00080.t01	Wine grape	cytosol	2.78	2.4
HORVU2Hr1G061990.1	Barley	cytosol	0.0	0.0
HORVU3Hr1G066830.2	Barley	extracellular	0.0	0.0
HORVU6Hr1G046850.1	Barley	cytosol	0.0	0.0
KRH54903	Soybean	plasma membrane	0.0	0.0

Protein Annotations

MapMan:35.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009772	GO:GO:0009987	GO:GO:0015979	GO:GO:0019684	GO:GO:0045156	InterPro:IPR036854
UniProt:M1CUA4	PFAM:PF00124	EnsemblPlantsGene:PGSC0003DMG400029115	PGSC:PGSC0003DMG400029115	EnsemblPlants:PGSC0003DMT400074870	PANTHER:PTHR33149
PANTHER:PTHR33149:SF8	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483	SignalP:SignalP-noTM	UniParc:UPI000294C0A3
SEG:seg	:	:	:	:	:

Description

Photosystem II D2 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029115]

Coordinates

chr10:+:23237652..23238086

Molecular Weight (calculated)

15836.0 Da

IEP (calculated)

6.752

GRAVY (calculated)

0.168

Length

144 amino acids

Sequence
(BLAST)

001: MGVAGVLGAA LLCAIHGATV EKTLFEDGDG AKTFHAFNPT HLSGIVSFQE RGRGYEFDTA ARRGSADCIR GLSVTTTCVT PTVAESLIRL LDKKDQSWIS
101: FSGRECYCFL NSSIPIYERD PIRYLAYEFM LSTRILAPFL VVFP

Best Arabidopsis Sequence Match ( ATCG00270.1 )
(BLAST)

001: MTIALGKFTK DEKDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL

Arabidopsis Description

PSBDPhotosystem II D2 protein [Source:UniProtKB/Swiss-Prot;Acc:P56761]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.