Factsheet for VIT_12s0055g00080.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g04460.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00270.1	VIT_06s0004g04460.t01	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G066830.2	Barley	extracellular	16.17	49.09
HORVU6Hr1G046850.1	Barley	cytosol	44.91	46.3
Solyc09g055950.1.1	Tomato	plastid	38.92	44.52
HORVU2Hr1G061990.1	Barley	cytosol	25.15	42.42
KRH54903	Soybean	plasma membrane	40.12	39.88
VIT_11s0103g00110.t01	Wine grape	extracellular, plasma membrane	17.96	38.46
PGSC0003DMT400020261	Potato	extracellular, plasma membrane, vacuole	31.14	33.33
ATCG00270.1	Thale cress	cytosol	60.48	28.61
TraesCS2B01G330700.1	Wheat	plastid	56.89	26.91
HORVU4Hr1G066680.2	Barley	plasma membrane	42.52	23.99
Solyc05g021190.1.1	Tomato	extracellular	3.59	6.74
VIT_00s0275g00010.t01	Wine grape	extracellular	2.4	5.71
VIT_11s0103g00100.t01	Wine grape	extracellular	2.4	3.74
PGSC0003DMT400074870	Potato	extracellular	2.4	2.78
TraesCS2D01G572800.1	Wheat	extracellular, plasma membrane, vacuole	2.4	2.58

Protein Annotations

MapMan:35.1	ProteinID:CBI19990	ProteinID:CBI19990.3	UniProt:D7ST76	EMBL:FN595228	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009507	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009772
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0016491
GO:GO:0018298	GO:GO:0019538	GO:GO:0019684	GO:GO:0045156	GO:GO:0046872	GO:GO:0055114
InterPro:IPR036854	PFAM:PF00124	PANTHER:PTHR33149	PANTHER:PTHR33149:SF8	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M
SUPFAM:SSF81483	TMHMM:TMhelix	UniParc:UPI0001BE1923	ArrayExpress:VIT_12s0055g00080	EnsemblPlantsGene:VIT_12s0055g00080	EnsemblPlants:VIT_12s0055g00080.t01
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:12661588..12663496

Molecular Weight (calculated)

19151.4 Da

IEP (calculated)

9.607

GRAVY (calculated)

0.195

Length

167 amino acids

Sequence
(BLAST)

001: MTIALGKFTK DESDLFNIMD DWLRRDRFVF VGWYNLFQPA NSLAHSLLLL WGLEAQGDLT RWCQLGGLWT FVALHGAFGL IGFMLRQFEL ARSVQLQTYN
101: AIAFSAPIFK LDTKLLPMNE ISALSLRSPS VSSRLQDKAL RISENYIFDK KTVFSLFASH ISHMRLI

Best Arabidopsis Sequence Match ( ATCG00270.1 )
(BLAST)

001: MTIALGKFTK DEKDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL

Arabidopsis Description

PSBDPhotosystem II D2 protein [Source:UniProtKB/Swiss-Prot;Acc:P56761]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.