Factsheet for PGSC0003DMT400020261

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, plasma membrane, vacuole

Predictor Summary:

plastid 3
extracellular 2
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001063

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00270.1	PGSC0003DMT400001063	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g021190.1.1	Tomato	extracellular	42.31	74.16
HORVU3Hr1G066830.2	Barley	extracellular	23.72	67.27
KRH54903	Soybean	plasma membrane	58.97	54.76
PGSC0003DMT400044462	Potato	cytosol	86.54	49.27
HORVU4Hr1G066680.2	Barley	plasma membrane	82.05	43.24
ATCG00270.1	Thale cress	cytosol	85.26	37.68
TraesCS2B01G330700.1	Wheat	plastid	85.26	37.68
VIT_12s0055g00080.t01	Wine grape	cytosol	33.33	31.14
PGSC0003DMT400016094	Potato	endoplasmic reticulum, extracellular, vacuole	20.51	26.67
TraesCS2D01G572800.1	Wheat	extracellular, plasma membrane, vacuole	22.44	22.58
HORVU6Hr1G046850.1	Barley	cytosol	23.08	22.22
PGSC0003DMT400074870	Potato	extracellular	19.87	21.53
HORVU2Hr1G061990.1	Barley	cytosol	2.56	4.04

Protein Annotations

Gene3D:1.20.85.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0019684	GO:GO:0045156	InterPro:IPR036854	UniProt:M1AD66	PFAM:PF00124
EnsemblPlantsGene:PGSC0003DMG400007834	PGSC:PGSC0003DMG400007834	EnsemblPlants:PGSC0003DMT400020261	PRINTS:PR00256	ScanProsite:PS00244	PANTHER:PTHR33149
PANTHER:PTHR33149:SF8	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483	TMHMM:TMhelix	UniParc:UPI0002965193
SEG:seg	:	:	:	:	:

Description

Photosystem II D2 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007834]

Coordinates

chr12:+:2442286..2442756

Molecular Weight (calculated)

17151.9 Da

IEP (calculated)

6.067

GRAVY (calculated)

0.734

Length

156 amino acids

Sequence
(BLAST)

001: MGPEAQGDFT RWCQLGGLWT FVEAFGLIGF TLRQFELARS VQLRPYNAIA FSGPIAVFVS VFLIYPLGQS GWFFAPSFGV AAIFRFILFF QGFHNWTLNP
101: FHMMGVAGVL GAALLCAIHG ATVENTLFED GDGANPIVVF VSIFFIYALG HSEVKI

Best Arabidopsis Sequence Match ( ATCG00270.1 )
(BLAST)

001: MTIALGKFTK DEKDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL

Arabidopsis Description

PSBDPhotosystem II D2 protein [Source:UniProtKB/Swiss-Prot;Acc:P56761]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.