Factsheet for PGSC0003DMT400044462

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020261	Potato	extracellular, plasma membrane, vacuole	49.27	86.54
TraesCS4A01G153100.1	Wheat	mitochondrion, plasma membrane	44.53	78.71
VIT_00s0275g00010.t01	Wine grape	extracellular	18.61	72.86
VIT_11s0103g00110.t01	Wine grape	extracellular, plasma membrane	19.34	67.95
Solyc09g031730.1.1	Tomato	extracellular, vacuole	17.52	59.26
VIT_11s0103g00100.t01	Wine grape	extracellular	17.15	43.93
PGSC0003DMT400016094	Potato	endoplasmic reticulum, extracellular, vacuole	18.61	42.5
PGSC0003DMT400074870	Potato	extracellular	14.96	28.47

Protein Annotations

MapMan:1.1.1.2.1.2	Gene3D:1.20.85.10	EntrezGene:4099961	wikigene:4099961	ProteinID:ABB90038	ProteinID:ABB90038.1
ProteinID:ABD47052	ProteinID:ABD47052.1	ProteinID:AEB72134	ProteinID:AEB72134.1	ProteinID:AEB72220	ProteinID:AEB72220.1
EMBL:DQ231562	EMBL:DQ386163	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0016491	GO:GO:0018298	GO:GO:0019538	GO:GO:0019684
GO:GO:0045156	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036854	EMBL:JF772170	EMBL:JF772171
UniProt:M1BG88	PFAM:PF00124	EnsemblPlantsGene:PGSC0003DMG400017258	PGSC:PGSC0003DMG400017258	EnsemblPlants:PGSC0003DMT400044462	PRINTS:PR00256
ScanProsite:PS00244	PANTHER:PTHR33149	PANTHER:PTHR33149:SF8	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483
TMHMM:TMhelix	UniParc:UPI000296AE8F	EntrezGene:psbD	wikigene:psbD	SEG:seg	:

Description

Photosystem II D2 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017258]

Coordinates

chr9:+:55838035..55839307

Molecular Weight (calculated)

30414.6 Da

IEP (calculated)

7.502

GRAVY (calculated)

0.331

Length

274 amino acids

Sequence
(BLAST)

001: MTIAIGKFTK DENDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFAVGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWTFVALHGA FGLIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFCKATKRI MEISSNGRKK SVDK

Best Arabidopsis Sequence Match ( ATCG00270.1 )
(BLAST)

001: MTIALGKFTK DEKDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL

Arabidopsis Description

PSBDPhotosystem II D2 protein [Source:UniProtKB/Swiss-Prot;Acc:P56761]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.