Factsheet for TraesCS4A01G153100.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, mitochondrion

Predictor Summary:

mitochondrion 3
golgi 2
endoplasmic reticulum 1
plasma membrane 3
vacuole 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plasma membrane
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	golgi
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G075700.1
TraesCS3B01G089800.1
TraesCS3D01G075800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00270.1	TraesCS3A01G075700.1	AT2G28800.1	15988575
ATCG00270.1	TraesCS3B01G089800.1	AT2G28800.1	15988575
ATCG00270.1	TraesCS3D01G075800.1	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0275g00010.t01	Wine grape	extracellular	38.06	84.29
Solyc09g031730.1.1	Tomato	extracellular, vacuole	34.84	66.67
HORVU3Hr1G066830.2	Barley	extracellular	21.94	61.82
VIT_11s0103g00110.t01	Wine grape	extracellular, plasma membrane	28.39	56.41
VIT_11s0103g00100.t01	Wine grape	extracellular	32.26	46.73
PGSC0003DMT400044462	Potato	cytosol	78.71	44.53
KRH76460	Soybean	cytosol	68.39	42.57
HORVU4Hr1G066680.2	Barley	plasma membrane	81.29	42.57
KRH62235	Soybean	endoplasmic reticulum, extracellular, vacuole	38.06	39.6
TraesCS2D01G572800.1	Wheat	extracellular, plasma membrane, vacuole	38.06	38.06
TraesCS2B01G330700.1	Wheat	plastid	85.81	37.68
TraesCS2D01G021000.1	Wheat	cytosol, plasma membrane, vacuole	85.81	37.68
HORVU2Hr1G121790.2	Barley	cytosol, plasma membrane, vacuole	85.81	37.68
KRH54903	Soybean	plasma membrane	40.65	37.5
ATCG00270.1	Thale cress	cytosol	85.16	37.39
TraesCS6D01G079500.1	Wheat	cytosol, plasma membrane, vacuole	84.52	37.11
HORVU6Hr1G046850.1	Barley	cytosol	7.74	7.41
HORVU2Hr1G061990.1	Barley	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.85.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979	GO:GO:0019684	GO:GO:0045156
InterPro:IPR036854	PFAM:PF00124	PRINTS:PR00256	ScanProsite:PS00244	PANTHER:PTHR33149	PANTHER:PTHR33149:SF7
InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS4A01G153100	EnsemblPlants:TraesCS4A01G153100.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:309504246..309504713

Molecular Weight (calculated)

17390.1 Da

IEP (calculated)

6.775

GRAVY (calculated)

0.570

Length

155 amino acids

Sequence
(BLAST)

001: MLRQFELARS VQLRPYNAIS FSGPIAVFVS IFLIYPLGQS GWFFAPSFGI AAIFRFILFF QGFHNWTLNP FHMMGVVVVL GAALLCAIHG ATIEITLFED
101: GDGANTFRAF NPTQAEETYS MVTANRFWSQ IFGVAFSNNL WSISLCYLYP SPVYG

Best Arabidopsis Sequence Match ( ATCG00270.1 )
(BLAST)

001: MTIALGKFTK DEKDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL

Arabidopsis Description

PSBDPhotosystem II D2 protein [Source:UniProtKB/Swiss-Prot;Acc:P56761]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.