Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0275g00010.t01 | Wine grape | extracellular | 50.47 | 77.14 |
| Solyc09g031730.1.1 | Tomato | extracellular, vacuole | 46.73 | 61.73 |
| TraesCS4A01G153100.1 | Wheat | mitochondrion, plasma membrane | 46.73 | 32.26 |
| PGSC0003DMT400044462 | Potato | cytosol | 43.93 | 17.15 |
| VIT_12s0055g00080.t01 | Wine grape | cytosol | 3.74 | 2.4 |
| VIT_11s0103g00110.t01 | Wine grape | extracellular, plasma membrane | 0.0 | 0.0 |
Protein Annotations
| MapMan:35.1 | ProteinID:CCB62276 | ProteinID:CCB62276.1 | UniProt:F6I5Q8 | EMBL:FN596751 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005506 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 |
| GO:GO:0009507 | GO:GO:0009523 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009772 |
| GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0016491 |
| GO:GO:0018298 | GO:GO:0019538 | GO:GO:0019684 | GO:GO:0045156 | GO:GO:0046872 | GO:GO:0055114 |
| InterPro:IPR036854 | PFAM:PF00124 | PANTHER:PTHR33149 | PANTHER:PTHR33149:SF8 | InterPro:Photo_II_D1/D2_sf | InterPro:Photo_RC_L/M |
| SUPFAM:SSF81483 | SignalP:SignalP-noTM | UniParc:UPI000210AB36 | ArrayExpress:VIT_11s0103g00100 | EnsemblPlantsGene:VIT_11s0103g00100 | EnsemblPlants:VIT_11s0103g00100.t01 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr11:-:15613323..15613799
Molecular Weight (calculated)
12050.4 Da
IEP (calculated)
4.137
GRAVY (calculated)
0.108
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVVGVLGVA LLCVIYGGTV ENTLFEDDDG ANTFRAFNPT QVEETYSMVT ANRFWSQIFG RKILNFETFY TKNILLNEGI LAWMAAQDQL HENLIFPEEV
101: LPRGNTL
101: LPRGNTL
001: MTIALGKFTK DEKDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL
Arabidopsis Description
PSBDPhotosystem II D2 protein [Source:UniProtKB/Swiss-Prot;Acc:P56761]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.