Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plasma membrane, vacuole
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- golgi 1
- plasma membrane 2
- endoplasmic reticulum 1
- vacuole 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G021000.1 | Wheat | cytosol, plasma membrane, vacuole | 97.73 | 97.73 |
| TraesCS2D01G572800.1 | Wheat | extracellular, plasma membrane, vacuole | 41.93 | 95.48 |
| TraesCS4A01G153100.1 | Wheat | mitochondrion, plasma membrane | 37.11 | 84.52 |
Protein Annotations
| MapMan:1.1.1.2.1.2 | Gene3D:1.20.85.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009523 | GO:GO:0009579 |
| GO:GO:0009772 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0019684 | GO:GO:0045156 |
| InterPro:IPR036854 | HAMAP:MF_01383 | PFAM:PF00124 | PRINTS:PR00256 | ScanProsite:PS00244 | InterPro:PSII_PsbD/D2 |
| PANTHER:PTHR33149 | PANTHER:PTHR33149:SF8 | InterPro:Photo_II_D1/D2_sf | InterPro:Photo_RC_L/M | SUPFAM:SSF81483 | TIGRFAMs:TIGR01152 |
| TMHMM:TMhelix | EnsemblPlantsGene:TraesCS6D01G079500 | EnsemblPlants:TraesCS6D01G079500.1 | TIGR:cd09288 | SEG:seg | : |
Description
No Description!
Coordinates
chr6D:-:45508433..45509494
Molecular Weight (calculated)
39556.7 Da
IEP (calculated)
5.279
GRAVY (calculated)
0.397
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MTIALGRIPK EENDLFDTMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE ACNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWTFVALHGA FALIGFMLRQ FELARPVQLR PYNAISFSGP IVVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSAIGVVGL ALNLCAYDFV
301: SQEIRAALDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL
101: DFTRWCQLGG LWTFVALHGA FALIGFMLRQ FELARPVQLR PYNAISFSGP IVVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSAIGVVGL ALNLCAYDFV
301: SQEIRAALDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL
001: MTIALGKFTK DEKDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL
Arabidopsis Description
PSBDPhotosystem II D2 protein [Source:UniProtKB/Swiss-Prot;Acc:P56761]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.