Factsheet for HORVU2Hr1G121790.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, vacuole

Predictor Summary:

cytosol 1
plasma membrane 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, vacuole
Any Predictor:	cytosol, plasma membrane, vacuole
MultiLoc:	cytosol
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G013690.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00270.1	HORVU3Hr1G013690.6	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G330700.1	Wheat	plastid	96.88	96.88
TraesCS2D01G021000.1	Wheat	cytosol, plasma membrane, vacuole	96.6	96.6
ATCG00270.1	Thale cress	cytosol	95.18	95.18
HORVU2Hr1G061990.1	Barley	cytosol	25.78	91.92
TraesCS4A01G153100.1	Wheat	mitochondrion, plasma membrane	37.68	85.81
HORVU4Hr1G066680.2	Barley	plasma membrane	70.54	84.12
HORVU6Hr1G046850.1	Barley	cytosol	34.84	75.93
HORVU3Hr1G066830.2	Barley	extracellular	11.33	72.73

Protein Annotations

MapMan:1.1.1.2.1.2	Gene3D:1.20.85.10	UniProt:A0A287JQ28	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009523	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009772	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0019684	GO:GO:0045156	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:HORVU2Hr1G121790
EnsemblPlants:HORVU2Hr1G121790.2	InterPro:IPR036854	HAMAP:MF_01383	PFAM:PF00124	PRINTS:PR00256	ScanProsite:PS00244
InterPro:PSII_PsbD/D2	PANTHER:PTHR33149	PANTHER:PTHR33149:SF8	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483
TIGRFAMs:TIGR01152	TMHMM:TMhelix	UniParc:UPI000B46F6A4	SEG:seg	:	:

Description

Photosystem II D2 protein [Source:UniProtKB/TrEMBL;Acc:A0A287JQ28]

Coordinates

chrchr2H:-:751774021..751776449

Molecular Weight (calculated)

39673.7 Da

IEP (calculated)

5.786

GRAVY (calculated)

0.350

Length

353 amino acids

Sequence
(BLAST)

001: MTIALCRVPK EENDLFDTMD DWLRRDRFVF VGWSSILLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPTNSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWTFVALHGA FALIGFMLRQ FELARSVQLR PYNAISFSGP IAVFVSVFLI YPLGQSGWFF APSFGIAAIF RFILFFQGFH NWTLNPFHMM
201: GLAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSAIGVVGL ALNLRAYDFV
301: SQEIHAAEDP EFKTFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL

Best Arabidopsis Sequence Match ( ATCG00270.1 )
(BLAST)

001: MTIALGKFTK DEKDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL

Arabidopsis Description

PSBDPhotosystem II D2 protein [Source:UniProtKB/Swiss-Prot;Acc:P56761]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.