CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH24811
KRH29812

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00270.1	KRH24811	AT2G28800.1	15988575
ATCG00270.1	KRH29812	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54903	Soybean	plasma membrane	48.19	71.43
TraesCS4A01G153100.1	Wheat	mitochondrion, plasma membrane	42.57	68.39
HORVU2Hr1G061990.1	Barley	cytosol	26.91	67.68
HORVU3Hr1G066830.2	Barley	extracellular	14.06	63.64
HORVU6Hr1G046850.1	Barley	cytosol	40.56	62.35
ATCG00270.1	Thale cress	cytosol	85.54	60.34
TraesCS2B01G330700.1	Wheat	plastid	84.34	59.49
HORVU4Hr1G066680.2	Barley	plasma membrane	67.87	57.09
KRH62235	Soybean	endoplasmic reticulum, extracellular, vacuole	18.88	31.54
TraesCS2D01G572800.1	Wheat	extracellular, plasma membrane, vacuole	18.07	29.03

Protein Annotations

Gene3D:1.20.85.10	MapMan:35.1	EMBL:ACUP02000615	EnsemblPlantsGene:GLYMA_01G153500	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0016491	GO:GO:0018298	GO:GO:0019538	GO:GO:0019684
GO:GO:0045156	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036854	UniProt:K7K415	EnsemblPlants:KRH76460
ProteinID:KRH76460	ProteinID:KRH76460.1	PFAM:PF00124	PRINTS:PR00256	PANTHER:PTHR33149	PANTHER:PTHR33149:SF8
MetaCyc:PWY-101	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483	TMHMM:TMhelix	UniParc:UPI000295C9CB

Description

hypothetical protein

Coordinates

chr1:-:49096257..49097050

Molecular Weight (calculated)

27912.9 Da

IEP (calculated)

6.131

GRAVY (calculated)

0.557

Length

249 amino acids

Sequence
(BLAST)

001: MTIALGKFTK DENDLFDIMD DWLRRDRFIF VGWSGLLLFP CAYFALGGCS YLEGCNFLIA AVSTPANSLA HSLLLLWGPE AQGDFTRWCQ LDGQWTFVAL
101: HGAFALIGFM LRQFELARSV QLRSYNAITF SSPIAVFVFV FLIYPPGQSG CFFAPSFGVV AIFRFILFFQ GFHNWTLNPF HMMGVAGVLG ATLLCVIHGA
201: TVENTLFEDG DGANTFRAFN PTQAKETYSI LLITMHTIIS HFLIWTLYS

Best Arabidopsis Sequence Match ( ATCG00270.1 )
(BLAST)

001: MTIALGKFTK DEKDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL

Arabidopsis Description

PSBDPhotosystem II D2 protein [Source:UniProtKB/Swiss-Prot;Acc:P56761]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.