CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH24811
KRH29812

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00270.1	KRH24811	AT2G28800.1	15988575
ATCG00270.1	KRH29812	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G572800.1	Wheat	extracellular, plasma membrane, vacuole	91.28	87.74
PGSC0003DMT400016094	Potato	endoplasmic reticulum, extracellular, vacuole	42.95	53.33
ATCG00270.1	Thale cress	cytosol	94.63	39.94
TraesCS2B01G330700.1	Wheat	plastid	91.95	38.81
TraesCS4A01G153100.1	Wheat	mitochondrion, plasma membrane	39.6	38.06
HORVU4Hr1G066680.2	Barley	plasma membrane	72.48	36.49
KRH76460	Soybean	cytosol	31.54	18.88
HORVU2Hr1G061990.1	Barley	cytosol	0.0	0.0
HORVU3Hr1G066830.2	Barley	extracellular	0.0	0.0
HORVU6Hr1G046850.1	Barley	cytosol	0.0	0.0
KRH54903	Soybean	plasma membrane	0.0	0.0

Protein Annotations

MapMan:35.1	EMBL:ACUP02002227	EnsemblPlantsGene:GLYMA_04G095000	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0019684	GO:GO:0045156	InterPro:IPR036854	UniProt:K7KJ53
EnsemblPlants:KRH62235	ProteinID:KRH62235	ProteinID:KRH62235.1	PFAM:PF00124	PANTHER:PTHR33149	PANTHER:PTHR33149:SF8
MetaCyc:PWY-101	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI00029569E1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:8470124..8470834

Molecular Weight (calculated)

16745.0 Da

IEP (calculated)

4.152

GRAVY (calculated)

0.214

Length

149 amino acids

Sequence
(BLAST)

001: MMGVAGVLGT TLLCVIHGAT VENTLFEDGD GANTFRAFNS TQAEETYSMV TANRFWSQIF GVAFSNKRWL HVFMLFVPVT GLWMSALGVV DLALNLRAYD
101: FVSQEIRAAE DPEFETFYIN NILLNEGIRA WMAAQDQPHE NLIFPEEVL

Best Arabidopsis Sequence Match ( ATCG00270.1 )
(BLAST)

001: MTIALGKFTK DEKDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL

Arabidopsis Description

PSBDPhotosystem II D2 protein [Source:UniProtKB/Swiss-Prot;Acc:P56761]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.