Factsheet for Solyc08g065370.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 6
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g031730.1.1	Tomato	extracellular, vacuole	21.69	22.22
Solyc07g008990.1.1	Tomato	mitochondrion	16.87	16.47
Solyc05g021190.1.1	Tomato	extracellular	0.0	0.0
Solyc09g055950.1.1	Tomato	plastid	0.0	0.0

Protein Annotations

MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009772	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0016491	GO:GO:0018298	GO:GO:0019538	GO:GO:0019684	GO:GO:0045156
GO:GO:0046872	GO:GO:0055114	InterPro:IPR036854	UniProt:K4CLB7	PFAM:PF00124	PANTHER:PTHR33149
PANTHER:PTHR33149:SF7	InterPro:Photo_II_D1/D2_sf	InterPro:Photo_RC_L/M	SUPFAM:SSF81483	EnsemblPlantsGene:Solyc08g065370.1	EnsemblPlants:Solyc08g065370.1.1
TMHMM:TMhelix	UniParc:UPI000276B6BF	:	:	:	:

Description

No Description!

Coordinates

chr8:+:53301032..53301283

Molecular Weight (calculated)

9603.7 Da

IEP (calculated)

5.698

GRAVY (calculated)

0.364

Length

83 amino acids

Sequence
(BLAST)

1: MLQASNFNLM PRPLTANRLW SQIFGVAFSN IRWLHFFMLF VPVTGLWMNA LGVVGLALNL RAYDFVSQEI RAAEDPEFET FYT

Best Arabidopsis Sequence Match ( ATCG00270.1 )
(BLAST)

001: MTIALGKFTK DEKDLFDIMD DWLRRDRFVF VGWSGLLLFP CAYFALGGWF TGTTFVTSWY THGLASSYLE GCNFLTAAVS TPANSLAHSL LLLWGPEAQG
101: DFTRWCQLGG LWAFVALHGA FALIGFMLRQ FELARSVQLR PYNAIAFSGP IAVFVSVFLI YPLGQSGWFF APSFGVAAIF RFILFFQGFH NWTLNPFHMM
201: GVAGVLGAAL LCAIHGATVE NTLFEDGDGA NTFRAFNPTQ AEETYSMVTA NRFWSQIFGV AFSNKRWLHF FMLFVPVTGL WMSALGVVGL ALNLRAYDFV
301: SQEIRAAEDP EFETFYTKNI LLNEGIRAWM AAQDQPHENL IFPEEVLPRG NAL

Arabidopsis Description

PSBDPhotosystem II D2 protein [Source:UniProtKB/Swiss-Prot;Acc:P56761]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.