Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g066110.1.1 | Tomato | plastid | 69.59 | 69.13 |
| PGSC0003DMT400001063 | Potato | plastid | 69.59 | 68.97 |
| VIT_06s0004g04460.t01 | Wine grape | plastid | 70.05 | 68.35 |
| KRH29812 | Soybean | plastid | 68.02 | 67.11 |
| KRH24811 | Soybean | plastid | 67.79 | 66.89 |
| CDX77209 | Canola | plastid | 65.77 | 65.77 |
| CDY31733 | Canola | plastid | 65.32 | 65.32 |
| Bra035669.1-P | Field mustard | plastid | 65.54 | 65.1 |
| HORVU3Hr1G013690.6 | Barley | mitochondrion | 61.04 | 64.99 |
| Os01t0151200-01 | Rice | plasma membrane | 65.77 | 63.62 |
| AT2G28800.1 | Thale cress | plastid | 65.77 | 63.2 |
| KXG31875 | Sorghum | plastid | 64.41 | 62.86 |
| TraesCS3B01G089800.1 | Wheat | plastid | 63.51 | 62.81 |
| TraesCS3A01G075700.1 | Wheat | plastid | 63.06 | 62.36 |
| TraesCS3D01G075800.1 | Wheat | plastid | 63.06 | 62.22 |
| Zm00001d039852_P001 | Maize | plastid | 63.29 | 61.76 |
| Zm00001d008625_P001 | Maize | mitochondrion | 63.96 | 61.08 |
| GSMUA_Achr5P28630_001 | Banana | cytosol, nucleus, plasma membrane | 70.95 | 45.0 |
| GSMUA_Achr5P25520_001 | Banana | plastid | 50.68 | 41.82 |
Protein Annotations
| MapMan:23.1.7.5 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0032977 |
| GO:GO:0051205 | EnsemblPlantsGene:GSMUA_Achr9G03990_001 | EnsemblPlants:GSMUA_Achr9P03990_001 | EnsemblPlants:GSMUA_Achr9T03990_001 | UniProt:M0TXA8 | InterPro:Membr_insert_YidC/Oxa1_C |
| PFAM:PF02096 | PANTHER:PTHR12428 | PANTHER:PTHR12428:SF19 | TIGRFAMs:TIGR03592 | TMHMM:TMhelix | UniParc:UPI0002961A1A |
| InterPro:YidC/ALB3/OXA1/COX18 | SEG:seg | : | : | : | : |
Description
Inner membrane protein PPF-1, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr9G03990_001]
Coordinates
chr9:+:2697995..2705213
Molecular Weight (calculated)
48389.8 Da
IEP (calculated)
10.298
GRAVY (calculated)
-0.070
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTLVSFRS SIIAAPLPPL PRGGRFGFPV YRPRKMGTRV RMSFQDIPPL HGADSLAHLH GIVSRVESLL YTLADATAPA TDASTVVQKN GGWFGFISDA
101: MEVVLKVLKD VFTAIHVPYA YGFAIILLTV IVKVLTFPLT KQQVESTLAM QNLQPKIKAI QERYKGNQER IQLETSRLYR QAGVNPLAGC FPTLATIPVW
201: IGLYQALSNV ANEGLLTEGF LWIPSLGGPT TIAARQNGSG ISWLIPFVDG HPPLGWSDTA AYLVLPVLLV ISQYVSMEIM KPPQTDDPAS KNSLLVFKFL
301: PVMIGYFSLS VPSGLSIYWF TNNILSTAQQ IWLRKLGGAK PAVSGDAGGI ISAGRAKRTA QPVQTGERLK QLKEEENRKM FNKALAVEGQ TSASTSISDD
401: ESDGESNDKG KVSDKAYSSA ESKKIPEYTA PKRGKRSKRK RAVP
101: MEVVLKVLKD VFTAIHVPYA YGFAIILLTV IVKVLTFPLT KQQVESTLAM QNLQPKIKAI QERYKGNQER IQLETSRLYR QAGVNPLAGC FPTLATIPVW
201: IGLYQALSNV ANEGLLTEGF LWIPSLGGPT TIAARQNGSG ISWLIPFVDG HPPLGWSDTA AYLVLPVLLV ISQYVSMEIM KPPQTDDPAS KNSLLVFKFL
301: PVMIGYFSLS VPSGLSIYWF TNNILSTAQQ IWLRKLGGAK PAVSGDAGGI ISAGRAKRTA QPVQTGERLK QLKEEENRKM FNKALAVEGQ TSASTSISDD
401: ESDGESNDKG KVSDKAYSSA ESKKIPEYTA PKRGKRSKRK RAVP
001: MARVLVSSPS SFFGSPLIKP SSSLRHSGVG GGGTAQFLPY RSNNNKLFTT STTVRFSLNE IPPFHGLDSS VDIGAIFTRA ESLLYTIADA AVVGADSVVT
101: TDSSAVQKSG GWFGFISDAM ELVLKILKDG LSAVHVPYAY GFAIILLTII VKAATYPLTK QQVESTLAMQ NLQPKIKAIQ QRYAGNQERI QLETSRLYKQ
201: AGVNPLAGCL PTLATIPVWI GLYQALSNVA NEGLFTEGFF WIPSLGGPTS IAARQSGSGI SWLFPFVDGH PPLGWYDTVA YLVLPVLLIA SQYVSMEIMK
301: PPQTDDPAQK NTLLVFKFLP LMIGYFALSV PSGLSIYWLT NNVLSTAQQV YLRKLGGAKP NMDENASKII SAGRAKRSIA QPDDAGERFR QLKEQEKRSK
401: KNKAVAKDTV ELVEESQSES EEGSDDEEEE AREGALASST TSKPLPEVGQ RRSKRSKRKR TV
101: TDSSAVQKSG GWFGFISDAM ELVLKILKDG LSAVHVPYAY GFAIILLTII VKAATYPLTK QQVESTLAMQ NLQPKIKAIQ QRYAGNQERI QLETSRLYKQ
201: AGVNPLAGCL PTLATIPVWI GLYQALSNVA NEGLFTEGFF WIPSLGGPTS IAARQSGSGI SWLFPFVDGH PPLGWYDTVA YLVLPVLLIA SQYVSMEIMK
301: PPQTDDPAQK NTLLVFKFLP LMIGYFALSV PSGLSIYWLT NNVLSTAQQV YLRKLGGAKP NMDENASKII SAGRAKRSIA QPDDAGERFR QLKEQEKRSK
401: KNKAVAKDTV ELVEESQSES EEGSDDEEEE AREGALASST TSKPLPEVGQ RRSKRSKRKR TV
Arabidopsis Description
ALB3ALB3 [Source:UniProtKB/TrEMBL;Acc:A0A178VUV3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.