Factsheet for GSMUA_Achr4P28830_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 3
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P02830_001
GSMUA_Achr4P17120_001
GSMUA_Achr5P01200_001
GSMUA_Achr5P14780_001
GSMUA_Achr8P13460_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22890.1	GSMUA_Achr5P01200_001	AT1G60950.1	18243102
AT4G22890.1	GSMUA_Achr4P17120_001	AT4G02770.1	18243102
AT4G22890.1	GSMUA_Achr5P14780_001	AT4G02770.1	18243102
AT4G22890.1	GSMUA_Achr11P...	AT5G66190.1	18243102
AT4G22890.1	GSMUA_Achr1P02830_001	AT5G66190.1	18243102
AT4G22890.1	GSMUA_Achr8P13460_001	AT5G66190.1	18243102
AT4G22890.1	GSMUA_AchrUn_...	ATCG00720.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P12240_001	Banana	plastid	83.33	74.37
Zm00001d034904_P001	Maize	plastid	59.57	73.36
KRH26378	Soybean	plasma membrane	37.23	70.95
Os08t0526300-02	Rice	plastid	78.37	67.17
PGSC0003DMT400032525	Potato	plastid	75.89	67.08
KXG34948	Sorghum	plastid	78.72	66.87
KRH57278	Soybean	plastid	75.53	66.36
KRH77457	Soybean	plastid	73.76	65.82
Zm00001d019454_P001	Maize	plastid	77.31	65.07
KRH04003	Soybean	plastid	76.6	65.06
VIT_02s0025g04710.t01	Wine grape	plastid	74.47	64.42
Solyc08g007770.2.1	Tomato	plastid	69.5	63.84
PGSC0003DMT400058521	Potato	plastid	72.34	63.75
CDY41285	Canola	plastid	71.99	63.64
CDY10819	Canola	plastid	71.99	63.64
Bra013653.1-P	Field mustard	plastid	71.99	63.64
AT4G11960.1	Thale cress	plastid	70.57	63.58
CDY68977	Canola	plastid	71.63	63.12
CDX94134	Canola	plastid	71.28	62.81
Bra019349.1-P	Field mustard	plastid	71.28	62.81
Solyc08g080050.2.1	Tomato	plastid	68.44	62.66
AT4G22890.1	Thale cress	plastid	71.28	62.04
CDY51552	Canola	plastid	69.86	61.56
Zm00001d034900_P001	Maize	plastid	70.21	61.49
Bra000757.1-P	Field mustard	plastid	69.5	61.25
CDX90812	Canola	plastid	69.5	61.25
Os03t0857400-01	Rice	plasma membrane	69.5	60.49
TraesCS5D01G569800.1	Wheat	plastid	66.67	58.02
TraesCS5B01G560400.1	Wheat	plastid	66.67	57.85
TraesCS4A01G319000.1	Wheat	plastid	66.31	57.54
HORVU5Hr1G124210.2	Barley	plastid	66.31	57.36
KXG37086	Sorghum	plastid	68.44	47.54
Os08t0310500-00	Rice	plastid	10.64	22.9

Protein Annotations

EnsemblPlants:GSMUA_Achr4P28830_001	EnsemblPlants:GSMUA_Achr4T28830_001	EnsemblPlantsGene:GSMUA_Achr4G28830_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR31032	PANTHER:PTHR31032:SF6	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002952BDE	UniProt:M0SSZ5
MapMan:1.1.6.1.2	:	:	:	:	:

Description

PGR5-like protein 1A, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr4G28830_001]

Coordinates

chr4:-:27071491..27079023

Molecular Weight (calculated)

32016.3 Da

IEP (calculated)

4.277

GRAVY (calculated)

-0.044

Length

282 amino acids

Sequence
(BLAST)

001: MQNTSYDNLE LSRFEFEYKN WVAGEAPSDE VIDSKILPYC SIDKKDKKTL GELEQEFLQA LQAFYYEKKA IMSNEEFDNL KEELMWEGSS VVMLSPDEQK
101: FLEASMAYVS GNPILTDAEF DELKLRLKKE GSSIVQEGPR CSLRSRKVYS DLNVDYFKMF LLNVPAAVIA LTLFFFLDDL TGFEITYLLE LPEPFSFIFT
201: WFAALPLIFW LAQVITNAIL KDFLILKGPC PNCGTENVSF FGTILSVPSG GSTNTVKCSN CGTTLVYDSR SRLITLPEPR EA

Best Arabidopsis Sequence Match ( AT4G22890.4 )
(BLAST)

001: MGSKMLFSLT SPRLFSAVSR KPSSSFSPSP PSPSSRTQWT QLSPGKSISL RRRVFLLPAK ATTEQSGGDN VDSNVLPYCS INKAEKKTIG EMEQEFLQAL
101: QSFYYDGKAI MSNEEFDNLK EELMWEGSSV VMLSSDEQRF LEASMAYVSG NPILNDEEYD KLKLKLKIDG SDIVSEGPRC SLRSKKVYSD LAVDYFKMLL
201: LNVPATVVAL GLFFFLDDIT GFEITYIMEL PEPYSFIFTW FAAVPVIVYL ALSITKLIIK DFLILKGPCP NCGTENTSFF GTILSISSGG KTNTVKCTNC
301: GTAMVYDSGS RLITLPEGSQ A

Arabidopsis Description

PGRL1APGR5-LIKE A [Source:UniProtKB/TrEMBL;Acc:A0A178UU76]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.