CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91274
KRH08061
KRH26360
KRH28804
KRH35533
KRH69775
KRH75043

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22890.1	KRH26360	AT1G60950.1	18243102
AT4G22890.1	KRG91274	AT4G02770.1	18243102
AT4G22890.1	KRH35533	AT4G02770.1	18243102
AT4G22890.1	KRH08061	AT5G66190.1	18243102
AT4G22890.1	KRH28804	AT5G66190.1	18243102
AT4G22890.1	KRH69775	AT5G66190.1	18243102
AT4G22890.1	KRH75043	ATCG00720.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57278	Soybean	plastid	84.64	87.54
KRH77457	Soybean	plastid	74.4	78.16
GSMUA_Achr4P28830_001	Banana	cytosol, peroxisome, plasma membrane	65.06	76.6
Bra000757.1-P	Field mustard	plastid	72.59	75.31
CDX90812	Canola	plastid	72.59	75.31
VIT_02s0025g04710.t01	Wine grape	plastid	73.8	75.15
KRH26378	Soybean	plasma membrane	33.43	75.0
CDY51552	Canola	plastid	71.99	74.69
AT4G11960.1	Thale cress	plastid	70.18	74.44
Bra019349.1-P	Field mustard	plastid	70.48	73.12
CDY68977	Canola	plastid	70.48	73.12
Zm00001d034904_P001	Maize	plastid	50.3	72.93
PGSC0003DMT400032525	Potato	plastid	69.88	72.73
AT4G22890.1	Thale cress	plastid	70.78	72.53
Bra013653.1-P	Field mustard	plastid	69.58	72.41
CDY41285	Canola	plastid	69.58	72.41
CDX94134	Canola	plastid	69.58	72.19
CDY10819	Canola	plastid	68.98	71.79
PGSC0003DMT400058521	Potato	plastid	68.37	70.94
GSMUA_Achr2P12240_001	Banana	plastid	67.17	70.57
Solyc08g007770.2.1	Tomato	plastid	65.06	70.36
Solyc08g080050.2.1	Tomato	plastid	63.86	68.83
Os08t0526300-02	Rice	plastid	64.46	65.05
Zm00001d034900_P001	Maize	plastid	62.95	64.91
KXG34948	Sorghum	plastid	64.76	64.76
Os03t0857400-01	Rice	plasma membrane	62.65	64.2
Zm00001d019454_P001	Maize	plastid	64.16	63.58
TraesCS5D01G569800.1	Wheat	plastid	62.05	63.58
TraesCS5B01G560400.1	Wheat	plastid	61.14	62.46
HORVU5Hr1G124210.2	Barley	plastid	60.84	61.96
TraesCS4A01G319000.1	Wheat	plastid	59.64	60.92
KXG37086	Sorghum	plastid	60.24	49.26
Os08t0310500-00	Rice	plastid	10.84	27.48

Protein Annotations

EMBL:ACUP02010373	EnsemblPlants:KRH04003	EnsemblPlantsGene:GLYMA_17G133200	EntrezGene:100784314	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	PANTHER:PTHR31032	PANTHER:PTHR31032:SF1	ProteinID:KRH04003	ProteinID:KRH04003.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI000233E7E5	UniProt:I1MUS7	MapMan:1.1.6.1.2	:	:

Description

hypothetical protein

Coordinates

chr17:-:10731906..10736593

Molecular Weight (calculated)

36669.9 Da

IEP (calculated)

4.529

GRAVY (calculated)

0.011

Length

332 amino acids

Sequence
(BLAST)

001: MFTASKLAFT LTPPRPCTAP LTPISSLSSS SSSSSASASG INFIQFNGRH LCLRRRLFLL SPKATADQQG KVEEFEDDSN VVDSKILPYC SIDKKEKKSI
101: GELEQEFLQA LQAFYYEGKA IMSNEEFDNL KEELMWEGSS VVMLSSDEQK FLEASMAYVS GNPIMSDKEF DELKLRLKKE GSEIVAEGPR CSLRSKKVYS
201: DLSVDYLKMF LLNVPATVIA LGLFFFLDDL TGFEITYLLE LPEPFSFIFT WFAAVPLIVW IALSLTNAIV KDFVILKGPC PNCGTENTSF FGTILSISNG
301: GSTNTVKCSN CGTAMEYDST SRLITLPEGS NA

Best Arabidopsis Sequence Match ( AT4G22890.1 )
(BLAST)

001: MGSKMLFSLT SPRLFSAVSR KPSSSFSPSP PSPSSRTQWT QLSPGKSISL RRRVFLLPAK ATTEQSGPVG GDNVDSNVLP YCSINKAEKK TIGEMEQEFL
101: QALQSFYYDG KAIMSNEEFD NLKEELMWEG SSVVMLSSDE QRFLEASMAY VSGNPILNDE EYDKLKLKLK IDGSDIVSEG PRCSLRSKKV YSDLAVDYFK
201: MLLLNVPATV VALGLFFFLD DITGFEITYI MELPEPYSFI FTWFAAVPVI VYLALSITKL IIKDFLILKG PCPNCGTENT SFFGTILSIS SGGKTNTVKC
301: TNCGTAMVYD SGSRLITLPE GSQA

Arabidopsis Description

PGRL1APGR5-LIKE A [Source:UniProtKB/TrEMBL;Acc:A0A178UU76]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.