CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89416
KRG91907
KRG96702
KRG97199
KRG97711
KRH00641
KRH03466
KRH04003
KRH04275
KRH05183
KRH06456
KRH09825
KRH11729
KRH14933
KRH15859
KRH23494
KRH24006
KRH26378
KRH27971
KRH28216
KRH28419
KRH29310
KRH31163
KRH34867
KRH36722
KRH40539
KRH44347
KRH44388
KRH47274
KRH47516
KRH47899
KRH48236
KRH50476
KRH54542
KRH54704
KRH56919
KRH57278
KRH57556
KRH57983
KRH61471
KRH63230
KRH63357
KRH65144
KRH68425
KRH68922
KRH73205
KRH77058
KRH77271
KRH77457
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03130.1	KRH44347	AT1G52220.1	18813226
AT1G03130.1	KRH47274	AT1G52220.1	18813226
AT1G03130.1	KRH28419	AT2G23290.1	21798944
AT1G03130.1	KRH57983	AT2G23290.1	21798944
AT1G03130.1	KRH77058	AT2G23290.1	21798944
AT1G03130.1	KRG97711	AT3G08530.1	21798944
AT1G03130.1	KRH14933	AT3G08530.1	21798944
AT1G03130.1	KRH31163	AT3G08530.1	21798944
AT1G03130.1	KRH73205	AT3G08530.1	21798944
AT1G03130.1	KRH61471	AT4G08150.1	21798944
AT1G03130.1	KRG89416	AT4G19700.1	21798944
AT1G03130.1	KRH11729	AT4G19700.1	21798944
AT1G03130.1	KRH36722	AT4G19700.1	21798944
AT1G03130.1	KRH50476	AT4G19700.1	21798944
AT1G03130.1	KRH05183	AT4G32190.1	21798944
AT1G03130.1	KRH15859	AT4G32190.1	21798944
AT1G03130.1	KRH54704	AT5G61010.1	21798944
AT1G03130.1	KRH63230	AT5G61010.1	21798944
AT4G02770.1	KRG97199	AT1G01260.1	21798944
AT4G02770.1	KRH06456	AT1G01260.1	21798944
AT4G02770.1	KRH47899	AT1G01260.1	21798944
AT4G02770.1	KRH68922	AT1G01260.1	21798944
AT4G02770.1	KRH09825	AT1G15670.1	21798944
AT4G02770.1	KRH23494	AT1G15670.1	21798944
AT4G02770.1	KRH44388	AT1G15670.1	21798944
AT4G02770.1	KRH47516	AT1G15670.1	21798944
AT4G02770.1	KRH03466	AT3G47620.1	21798944
AT4G02770.1	KRH54542	AT3G47620.1	21798944
AT4G02770.1	KRH56919	AT3G47620.1	21798944
AT4G02770.1	KRH63357	AT3G47620.1	21798944
AT4G02770.1	KRH24006	AT3G48150.1	21798944
AT4G02770.1	KRH27971	AT3G48150.1	21798944
AT4G02770.1	KRH29310	AT3G48150.1	21798944
AT4G02770.1	KRH77487	AT3G48150.1	21798944
AT4G02770.1	KRH00641	AT3G61150.1	21798944
AT4G02770.1	KRH40539	AT3G61150.1	21798944
AT4G02770.1	KRH48236	AT3G61150.1	21798944
AT4G02770.1	KRH65144	AT3G61150.1	21798944
AT4G02770.1	KRG96702	AT4G15510.1	23221595
AT4G02770.1	KRH68425	AT4G15510.1	23221595
AT4G02770.1	KRH04275	AT4G17680.1	21798944
AT4G02770.1	KRH28216	AT4G17680.1	21798944
AT4G02770.1	KRH57556	AT4G17680.1	21798944
AT4G02770.1	KRH77271	AT4G17680.1	21798944
AT4G02770.1	KRH04003	AT4G22890.1	18243102
AT4G02770.1	KRH26378	AT4G22890.1	18243102
AT4G02770.1	KRH57278	AT4G22890.1	18243102
AT4G02770.1	KRH77457	AT4G22890.1	18243102
AT4G02770.1	KRG91907	AT4G30080.1	21798944
AT4G02770.1	KRH34867	AT4G30080.1	21798944
AT4G02770.1	KRH54704	AT5G61010.1	21798944
AT4G02770.1	KRH63230	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35533	Soybean	plastid	95.07	91.9
VIT_05s0020g03180.t01	Wine grape	plastid	85.71	85.29
PGSC0003DMT400030843	Potato	cytosol, extracellular, plastid	84.24	82.61
VIT_07s0151g01000.t01	Wine grape	plastid	82.76	82.35
Solyc06g054260.1.1	Tomato	plastid	83.74	81.73
Os08t0560900-01	Rice	extracellular, plastid	77.34	77.34
EER93246	Sorghum	plastid	75.37	76.12
GSMUA_Achr4P17120_001	Banana	plastid	76.35	74.88
GSMUA_Achr5P14780_001	Banana	plastid	75.86	74.4
AT1G03130.1	Thale cress	plastid	74.38	74.02
TraesCS5D01G468400.1	Wheat	plastid	74.38	74.02
Zm00001d034543_P001	Maize	plastid	72.41	73.87
TraesCS5A01G457500.1	Wheat	plastid	74.38	73.66
TraesCS5B01G466700.1	Wheat	plastid	74.38	73.66
AT4G02770.1	Thale cress	plastid	73.89	72.12
CDY22079	Canola	plastid	47.29	64.0
Zm00001d013039_P001	Maize	plastid	72.91	62.71
Bra036240.1-P	Field mustard	plastid	74.38	54.12
CDY21916	Canola	plastid	74.38	53.74
HORVU5Hr1G109710.2	Barley	cytosol, plastid	63.05	46.72

Protein Annotations

MapMan:1.1.4.2.4	EntrezGene:100800992	Gene3D:3.30.1470.10	EMBL:ACUP02012673	EnsemblPlantsGene:GLYMA_20G144700	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009522	GO:GO:0009536	GO:GO:0009538	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	UniProt:I1NGD2	EnsemblPlants:KRG91274	ProteinID:KRG91274	ProteinID:KRG91274.1	PFAM:PF02531
PANTHER:PTHR31982	PANTHER:PTHR31982:SF4	InterPro:PsaD	InterPro:PsaD_sf	SUPFAM:SSF64234	UniParc:UPI000233DDB3

Description

hypothetical protein

Coordinates

chr20:+:38325181..38328005

Molecular Weight (calculated)

22403.9 Da

IEP (calculated)

10.284

GRAVY (calculated)

-0.486

Length

203 amino acids

Sequence
(BLAST)

001: MAMATQASLF TPPLSGLKPS DRATAPWKQS STLSFSTSKP LKFSRTIRAA ATDQTTEAPV GFTPPELDPN TPSPIFGGST GGLLRKAQVE EFYVITWDSP
101: KEQIFEMPTG GAAIMREGPN LLKLARKEQC LALGTRLRSK YKIKYQFYRV FPNGEVQYLH PKDGVYPEKV NAGRQGVGQN FRSIGKNVSP IEVKFTGKQP
201: YDL

Best Arabidopsis Sequence Match ( AT1G03130.1 )
(BLAST)

001: MATQAAGIFS PAITTTTSAV KKLHLFSSSH RPKSLSFTKT AIRAEKTESS SAAPAVKEAP VGFTPPQLDP NTPSPIFAGS TGGLLRKAQV EEFYVITWNS
101: PKEQIFEMPT GGAAIMREGP NLLKLARKEQ CLALGTRLRS KYKITYQFYR VFPNGEVQYL HPKDGVYPEK ANPGREGVGL NMRSIGKNVS PIEVKFTGKQ
201: SYDL

Arabidopsis Description

PSAD2Photosystem I reaction center subunit II-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SA56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.