Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G30080.1 | KRG99964 | AT5G38420.1 | 21798944 |
| AT4G30080.1 | KRG99965 | AT5G38420.1 | 21798944 |
| AT4G30080.1 | KRH01757 | AT5G38420.1 | 21798944 |
| AT4G30080.1 | KRH15458 | AT5G38420.1 | 21798944 |
| AT4G30080.1 | KRH46925 | AT5G38420.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG91907 | Soybean | nucleus | 91.18 | 94.1 |
| HORVU4Hr1G078490.1 | Barley | cytosol, nucleus, plastid | 11.76 | 64.29 |
| KRH19870 | Soybean | nucleus | 51.63 | 61.48 |
| HORVU3Hr1G081710.1 | Barley | cytosol | 10.13 | 59.05 |
| HORVU5Hr1G024100.1 | Barley | cytosol | 14.54 | 58.94 |
| VIT_13s0019g04380.t01 | Wine grape | nucleus | 60.46 | 54.49 |
| Os04t0519700-01 | Rice | nucleus | 34.48 | 53.83 |
| GSMUA_Achr11P... | Banana | nucleus | 52.94 | 53.64 |
| GSMUA_Achr4P18240_001 | Banana | nucleus | 52.61 | 53.05 |
| GSMUA_Achr11P... | Banana | nucleus | 46.57 | 52.68 |
| CDY43553 | Canola | nucleus | 51.63 | 51.72 |
| CDX68620 | Canola | nucleus | 51.8 | 51.38 |
| GSMUA_Achr5P03960_001 | Banana | nucleus | 46.9 | 51.34 |
| GSMUA_Achr5P18540_001 | Banana | nucleus | 43.46 | 51.25 |
| KRH32480 | Soybean | nucleus | 57.84 | 50.57 |
| GSMUA_Achr8P18930_001 | Banana | nucleus | 47.22 | 50.44 |
| Bra011162.1-P | Field mustard | nucleus | 53.1 | 50.23 |
| AT4G30080.1 | Thale cress | nucleus | 54.74 | 50.0 |
| KRG95987 | Soybean | nucleus | 56.37 | 49.29 |
| Os06t0685700-01 | Rice | nucleus | 55.56 | 48.57 |
| HORVU1Hr1G041770.1 | Barley | nucleus | 54.41 | 48.4 |
| KRH22880 | Soybean | nucleus | 52.94 | 48.36 |
| Zm00001d014013_P002 | Maize | nucleus | 50.82 | 48.29 |
| TraesCS1D01G155100.1 | Wheat | nucleus | 54.25 | 48.26 |
| EER88840 | Sorghum | nucleus | 55.88 | 48.24 |
| Os10t0479900-01 | Rice | nucleus | 54.9 | 48.14 |
| TraesCS1A01G156600.1 | Wheat | nucleus | 54.09 | 48.11 |
| KRH25023 | Soybean | nucleus | 55.07 | 48.07 |
| TraesCS1B01G173700.1 | Wheat | nucleus | 54.25 | 48.05 |
| EER94066 | Sorghum | nucleus | 54.09 | 48.04 |
| TraesCS7D01G436800.1 | Wheat | nucleus | 54.41 | 47.91 |
| GSMUA_Achr5P14630_001 | Banana | nucleus | 43.14 | 47.91 |
| TraesCS7B01G346700.1 | Wheat | nucleus | 54.25 | 47.84 |
| HORVU7Hr1G101270.1 | Barley | nucleus | 54.41 | 47.78 |
| Os02t0628600-01 | Rice | nucleus | 53.1 | 47.72 |
| KRH26435 | Soybean | nucleus | 54.41 | 47.57 |
| Zm00001d032683_P001 | Maize | nucleus | 52.61 | 47.28 |
| TraesCS7A01G446900.1 | Wheat | nucleus | 54.09 | 47.22 |
| KRH29907 | Soybean | nucleus | 53.43 | 46.92 |
| Zm00001d000358_P001 | Maize | nucleus | 53.1 | 46.43 |
| KRH16622 | Soybean | mitochondrion | 9.97 | 46.21 |
| Zm00001d014507_P002 | Maize | nucleus | 54.74 | 46.21 |
| TraesCS6A01G222300.1 | Wheat | nucleus | 50.16 | 45.68 |
| EES05458 | Sorghum | nucleus | 52.12 | 45.06 |
| Zm00001d017284_P001 | Maize | nucleus | 51.8 | 44.84 |
| Bra024109.1-P | Field mustard | nucleus | 49.84 | 43.95 |
| Zm00001d051172_P001 | Maize | nucleus | 50.98 | 43.88 |
| TraesCS2B01G397300.1 | Wheat | nucleus | 49.35 | 42.66 |
| TraesCS2D01G376600.1 | Wheat | nucleus | 49.51 | 42.44 |
| TraesCS6B01G258800.1 | Wheat | mitochondrion | 50.65 | 41.5 |
| HORVU2Hr1G089670.1 | Barley | nucleus | 47.55 | 40.99 |
| HORVU6Hr1G058890.2 | Barley | mitochondrion | 50.33 | 40.58 |
| TraesCS6D01G212700.1 | Wheat | plastid | 50.98 | 40.57 |
| KRH25669 | Soybean | cytosol | 7.35 | 40.18 |
| Zm00001d025871_P001 | Maize | nucleus | 38.24 | 39.8 |
| KXG26729 | Sorghum | nucleus, plastid | 46.08 | 39.06 |
| CDY46728 | Canola | nucleus | 53.76 | 38.98 |
| KXG36152 | Sorghum | nucleus | 41.99 | 38.76 |
| KRH10952 | Soybean | nucleus | 17.97 | 37.8 |
| KRH18828 | Soybean | nucleus | 33.66 | 37.39 |
| HORVU7Hr1G021880.1 | Barley | nucleus | 13.4 | 37.1 |
| CDY30172 | Canola | nucleus | 50.0 | 36.87 |
| KRH64757 | Soybean | plastid | 31.54 | 34.34 |
| KRH16623 | Soybean | nucleus | 21.57 | 34.2 |
| TraesCS2A01G380300.1 | Wheat | nucleus | 20.75 | 31.44 |
| HORVU2Hr1G089660.8 | Barley | nucleus | 15.03 | 28.31 |
| KRH50128 | Soybean | nucleus | 28.76 | 24.82 |
| KRH20373 | Soybean | nucleus | 28.92 | 24.79 |
| KRH21341 | Soybean | nucleus | 28.43 | 23.64 |
| KRH10951 | Soybean | cytosol, nucleus | 10.29 | 14.72 |
| KRH19868 | Soybean | nucleus | 0.65 | 4.49 |
Protein Annotations
| EntrezGene:100803053 | MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | EMBL:ACUP02006639 | InterPro:Auxin_resp |
| InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | EnsemblPlantsGene:GLYMA_10G210600 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR003340 |
| InterPro:IPR015300 | UniProt:K7LKL9 | EnsemblPlants:KRH34867 | ProteinID:KRH34867 | ProteinID:KRH34867.1 | PFAM:PF02362 |
| PFAM:PF06507 | PFscan:PS50863 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF39 | SMART:SM01019 | SUPFAM:SSF101936 |
| UniParc:UPI00023CE680 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr10:+:44284423..44287975
Molecular Weight (calculated)
67131.3 Da
IEP (calculated)
7.484
GRAVY (calculated)
-0.397
Length
612 amino acids
Sequence
(BLAST)
(BLAST)
001: MFMVMDSAER CLDSQLWHAC AGAMVQMPPL NTKVFYFPQG HAEHAHGKVE YFGKNHQTRV PPLIPCRLSA MKYMADPDTD EVYVKMRLTP LREHELLDSQ
101: DDCFLGNTNS GGVENQEKPP TSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTIIAKDMHG QCWKFRHIYR GTPRRHLLTT GWSNFVNQKR
201: LVAGDSIVFL RAENGDLCVG IRRAKKGIGG GTEFSSGWNN PLFGGGGGFL CGSESSFVSG AKSGGDHEIV GRVAPESVVE AVTCAVNGRP FEVVYYPRAS
301: SPEFCVKASV VKAAMQIQWC SGMRFKMPFE TEDSSRISWF MGTISSVQVA DPIRWPDSPW RLLQVVWDEP DLLQNVKCVN PWLVELVSNM PTFNLSAYSP
401: PRKKQRFLQD PYFQVINQLP MPSFSSNLLN YTNSLCTIQD SNSSGGIQGA RHAQFGLSPS DFPFNKLPAD MLLGGFSRLD HAAAQPIRPP CGTYKNNTTT
501: KANVGISCLL TVGNPGQNFK ESNETKAPHI LLFGKLIQTE QKSSNTSSAN TNGNSVSEGN SHKTSNASDG VGSGLHQGSP IENNSDGGSP WYKDQHKSDL
601: GTDNVNTLCI AL
101: DDCFLGNTNS GGVENQEKPP TSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTIIAKDMHG QCWKFRHIYR GTPRRHLLTT GWSNFVNQKR
201: LVAGDSIVFL RAENGDLCVG IRRAKKGIGG GTEFSSGWNN PLFGGGGGFL CGSESSFVSG AKSGGDHEIV GRVAPESVVE AVTCAVNGRP FEVVYYPRAS
301: SPEFCVKASV VKAAMQIQWC SGMRFKMPFE TEDSSRISWF MGTISSVQVA DPIRWPDSPW RLLQVVWDEP DLLQNVKCVN PWLVELVSNM PTFNLSAYSP
401: PRKKQRFLQD PYFQVINQLP MPSFSSNLLN YTNSLCTIQD SNSSGGIQGA RHAQFGLSPS DFPFNKLPAD MLLGGFSRLD HAAAQPIRPP CGTYKNNTTT
501: KANVGISCLL TVGNPGQNFK ESNETKAPHI LLFGKLIQTE QKSSNTSSAN TNGNSVSEGN SHKTSNASDG VGSGLHQGSP IENNSDGGSP WYKDQHKSDL
601: GTDNVNTLCI AL
001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG
Arabidopsis Description
ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.