Factsheet for GSMUA_Achr5P14630_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P20000_001
GSMUA_Achr1P20010_001
GSMUA_Achr1P20040_001
GSMUA_Achr2P19760_001
GSMUA_Achr2P22730_001
GSMUA_Achr3P16300_001
GSMUA_Achr4P18240_001
GSMUA_Achr5P03960_001
GSMUA_Achr5P09310_001
GSMUA_Achr5P14630_001
GSMUA_Achr5P18540_001
GSMUA_Achr6P09710_001
GSMUA_Achr6P36980_001
GSMUA_Achr7P13680_001
GSMUA_Achr7P24330_001
GSMUA_Achr8P18400_001
GSMUA_Achr8P18930_001
GSMUA_Achr8P29850_001
GSMUA_Achr9P16800_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28350.1	GSMUA_Achr1P20000_001	AT1G19850.1	22096563
AT2G28350.1	GSMUA_Achr1P20010_001	AT1G19850.1	22096563
AT2G28350.1	GSMUA_Achr1P20040_001	AT1G19850.1	22096563
AT2G28350.1	GSMUA_Achr6P36980_001	AT1G19850.1	22096563
AT2G28350.1	GSMUA_Achr10P...	AT1G34310.1	22096563
AT2G28350.1	GSMUA_Achr2P19760_001	AT1G34310.1	22096563
AT2G28350.1	GSMUA_Achr7P24330_001	AT1G34310.1	22096563
AT2G28350.1	GSMUA_AchrUn_...	AT1G34310.1	22096563
AT2G28350.1	GSMUA_Achr11P...	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr11P...	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr4P18240_001	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr5P03960_001	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr5P14630_001	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr5P18540_001	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr8P18930_001	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr3P16300_001	AT3G16500.1	21734647
AT2G28350.1	GSMUA_Achr5P09310_001	AT3G16500.1	21734647
AT2G28350.1	GSMUA_Achr7P13680_001	AT3G16500.1	21734647
AT2G28350.1	GSMUA_AchrUn_...	AT3G16500.1	21734647
AT2G28350.1	GSMUA_Achr10P...	AT3G61830.1	22096563
AT2G28350.1	GSMUA_Achr2P19760_001	AT3G61830.1	22096563
AT2G28350.1	GSMUA_Achr7P24330_001	AT3G61830.1	22096563
AT2G28350.1	GSMUA_AchrUn_...	AT3G61830.1	22096563
AT2G28350.1	GSMUA_Achr3P16300_001	AT5G25890.1	22096563
AT2G28350.1	GSMUA_Achr5P09310_001	AT5G25890.1	22096563
AT2G28350.1	GSMUA_Achr7P13680_001	AT5G25890.1	22096563
AT2G28350.1	GSMUA_AchrUn_...	AT5G25890.1	22096563
AT4G30080.1	GSMUA_Achr8P29850_001	AT3G17600.1	21798944
AT4G30080.1	GSMUA_Achr9P16800_001	AT3G17600.1	21798944
AT4G30080.1	GSMUA_Achr10P...	AT5G38420.1	21798944
AT4G30080.1	GSMUA_Achr2P22730_001	AT5G38420.1	21798944
AT4G30080.1	GSMUA_Achr6P09710_001	AT5G38420.1	21798944
AT4G30080.1	GSMUA_Achr8P18400_001	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P03960_001	Banana	nucleus	74.59	73.52
GSMUA_Achr5P18540_001	Banana	nucleus	65.15	69.17
GSMUA_Achr4P18240_001	Banana	nucleus	75.86	68.86
GSMUA_Achr11P...	Banana	nucleus	63.7	64.88
GSMUA_Achr8P18930_001	Banana	nucleus	65.7	63.18
GSMUA_Achr11P...	Banana	nucleus	63.34	57.78
VIT_06s0004g02750.t01	Wine grape	nucleus	69.87	54.15
EER94066	Sorghum	nucleus	66.42	53.12
VIT_08s0040g01810.t01	Wine grape	nucleus	59.89	52.97
Zm00001d014013_P002	Maize	nucleus	61.89	52.95
PGSC0003DMT400055522	Potato	nucleus	66.06	52.6
Solyc09g007810.2.1	Tomato	nucleus	66.06	52.45
Zm00001d032683_P001	Maize	nucleus	64.79	52.42
TraesCS1A01G156600.1	Wheat	nucleus	65.15	52.18
HORVU1Hr1G041770.1	Barley	nucleus	65.15	52.18
TraesCS1D01G155100.1	Wheat	nucleus	65.15	52.18
TraesCS1B01G173700.1	Wheat	nucleus	65.34	52.1
Os06t0685700-01	Rice	nucleus	66.06	52.0
VIT_13s0019g04380.t01	Wine grape	nucleus	63.88	51.84
KRH22880	Soybean	nucleus	62.61	51.49
TraesCS7B01G346700.1	Wheat	nucleus	64.79	51.44
TraesCS7D01G436800.1	Wheat	nucleus	64.79	51.37
Os10t0479900-01	Rice	nucleus	64.61	51.0
KRH32480	Soybean	nucleus	64.79	51.0
Solyc11g069500.1.1	Tomato	nucleus	64.61	50.93
CDY43553	Canola	nucleus	56.44	50.9
CDX68620	Canola	nucleus	56.99	50.89
TraesCS7A01G446900.1	Wheat	nucleus	64.61	50.78
KRH26435	Soybean	nucleus	64.43	50.71
HORVU7Hr1G101270.1	Barley	nucleus	64.07	50.65
EER88840	Sorghum	nucleus	65.15	50.63
KRH29907	Soybean	nucleus	63.7	50.36
KRH25023	Soybean	nucleus	64.07	50.36
PGSC0003DMT400020874	Potato	nucleus	63.52	50.07
Os02t0628600-01	Rice	nucleus	61.34	49.63
Zm00001d014507_P002	Maize	nucleus	64.43	48.97
Bra011162.1-P	Field mustard	nucleus	57.35	48.84
KRG95987	Soybean	nucleus	61.89	48.71
AT4G30080.1	Thale cress	nucleus	58.98	48.51
Zm00001d000358_P001	Maize	nucleus	60.44	47.57
TraesCS2A01G380300.1	Wheat	nucleus	34.85	47.52
EES05458	Sorghum	nucleus	60.8	47.32
Zm00001d017284_P001	Maize	nucleus	60.44	47.1
Solyc06g075150.2.1	Tomato	nucleus	56.26	46.2
CDY15734	Canola	nucleus	56.99	46.18
PGSC0003DMT400062489	Potato	nucleus	56.44	46.01
CDY04557	Canola	nucleus	57.17	45.99
AT2G28350.1	Thale cress	nucleus	57.35	45.6
Zm00001d051172_P001	Maize	nucleus	58.26	45.15
Bra011955.1-P	Field mustard	nucleus	57.71	45.11
TraesCS6A01G222300.1	Wheat	nucleus	54.27	44.49
TraesCS2B01G397300.1	Wheat	nucleus	56.44	43.93
TraesCS2D01G376600.1	Wheat	nucleus	56.81	43.84
KRG91907	Soybean	nucleus	46.82	43.51
KRH34867	Soybean	nucleus	47.91	43.14
TraesCS6B01G258800.1	Wheat	mitochondrion	58.26	42.97
HORVU6Hr1G058890.2	Barley	mitochondrion	59.17	42.95
HORVU2Hr1G089670.1	Barley	nucleus	54.99	42.68
Bra024109.1-P	Field mustard	nucleus	52.63	41.79
Os04t0519700-01	Rice	nucleus	29.58	41.58
TraesCS6D01G212700.1	Wheat	plastid	57.53	41.22
Solyc10g086130.1.1	Tomato	nucleus	47.19	41.2
KXG36152	Sorghum	nucleus	47.55	39.52
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	7.99	39.29
KXG26729	Sorghum	nucleus, plastid	50.45	38.5
CDY46728	Canola	nucleus	57.17	37.32
Zm00001d025871_P001	Maize	nucleus	39.38	36.9
GSMUA_Achr9P29480_001	Banana	nucleus	29.58	36.38
CDY30172	Canola	nucleus	52.81	35.06
GSMUA_Achr6P18900_001	Banana	plastid	25.95	34.79
HORVU5Hr1G024100.1	Barley	cytosol	8.53	31.13
GSMUA_Achr10P...	Banana	nucleus	24.32	26.8
HORVU2Hr1G089660.8	Barley	nucleus	13.79	23.38
GSMUA_Achr10P...	Banana	nucleus	24.14	23.13
HORVU3Hr1G081710.1	Barley	cytosol	3.99	20.95
GSMUA_Achr7P11000_001	Banana	nucleus	22.14	20.4
GSMUA_Achr4P10590_001	Banana	nucleus	24.86	19.19
HORVU7Hr1G021880.1	Barley	nucleus	7.62	19.0
GSMUA_Achr7P25330_001	Banana	nucleus	24.14	18.29
GSMUA_Achr4P02750_001	Banana	nucleus	23.23	17.83
GSMUA_Achr3P31350_001	Banana	nucleus	23.23	16.14

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:Auxin_resp	InterPro:B3_DNA-bd
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr5G14630_001	EnsemblPlants:GSMUA_Achr5P14630_001
EnsemblPlants:GSMUA_Achr5T14630_001	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	UniProt:M0SYJ2	InterPro:PB1_dom
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF27
SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI00029612DF	SEG:seg	:	:

Description

Auxin response factor 18 [Source:GMGC_GENE;Acc:GSMUA_Achr5G14630_001]

Coordinates

chr5:-:10553538..10558305

Molecular Weight (calculated)

60703.9 Da

IEP (calculated)

8.054

GRAVY (calculated)

-0.253

Length

551 amino acids

Sequence
(BLAST)

001: MKEPPSMKQT DKCLDSQLWH ACAGGMVQMP AVNSKVYYFP QGHAEHAQGV VDFGTSRRIP PLILCRVTAL KFMADQETDE IFAKIHMTVH AKDVHGEIWK
101: FRHIYRGTPR RHLLTTGWST FVNQKKLVAG DSIVFLRTKD GDLCVGIRRA KRESKLMRGN GNGGSFSSGG GTRIGGRVRA DSVIEAATLA AHGKPFEVMY
201: YPRASTLEFC VKAASVKAAM RIQWCPAMRF KMAFETEDSS RISWFMGTIS SVQIADPVRW PNSPWKLLQV TWDEPDLLQN VNCVNPWLVE LVSNMPAIHL
301: PPFSPPRKKL RIPQHSDFPL EGQLPTPMFP GNPLGHSTSP LCCLPDSTPA GIQGARHAQF GIPLSDLHLD KLQSGLFHAG FHRLGYPTSL SKISTGLIID
401: MLFGKQILTE EQISLSNSGD MVSPGATANS SSDGNLEKTT NLSDELGLET GHCKVFMESD DVGRTLDLSV FASYEELYGT LADMFRIKRS EMTSHVIYKD
501: ATGAVKHTGD EPFSDFMKSA RRLTILIDSG SDNTGRSTLP GSLDANLPCC S

Best Arabidopsis Sequence Match ( AT1G77850.1 )
(BLAST)

001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG

Arabidopsis Description

ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.