Factsheet for GSMUA_Achr7P11000_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P31350_001
GSMUA_Achr4P02750_001
GSMUA_Achr4P10590_001
GSMUA_Achr7P11000_001
GSMUA_Achr7P25330_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33860.1	GSMUA_Achr10P...	AT2G33860.1	24485461
AT2G33860.1	GSMUA_Achr3P31350_001	AT2G33860.1	24485461
AT2G33860.1	GSMUA_Achr4P02750_001	AT2G33860.1	24485461
AT2G33860.1	GSMUA_Achr4P10590_001	AT2G33860.1	24485461
AT2G33860.1	GSMUA_Achr7P11000_001	AT2G33860.1	24485461
AT2G33860.1	GSMUA_Achr7P25330_001	AT2G33860.1	24485461

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	58.19	60.52
CDY17209	Canola	nucleus	43.31	43.02
Bra005465.1-P	Field mustard	nucleus	43.31	42.81
Bra021885.1-P	Field mustard	nucleus	39.46	42.75
AT2G33860.1	Thale cress	nucleus	43.31	42.6
CDY27929	Canola	nucleus	43.14	42.43
CDY37679	Canola	nucleus	42.14	42.42
GSMUA_Achr4P10590_001	Banana	nucleus	49.16	41.18
GSMUA_Achr4P02750_001	Banana	nucleus	49.16	40.95
GSMUA_Achr7P25330_001	Banana	nucleus	48.66	40.03
KRH50128	Soybean	nucleus	45.99	38.79
KRH20373	Soybean	nucleus	46.15	38.66
VIT_10s0003g00420.t01	Wine grape	nucleus	49.67	38.13
KRH21341	Soybean	nucleus	46.49	37.77
PGSC0003DMT400081282	Potato	nucleus	45.82	36.63
Solyc02g077560.2.1	Tomato	nucleus	45.15	36.14
GSMUA_Achr3P31350_001	Banana	nucleus	46.15	34.8
GSMUA_Achr9P29480_001	Banana	nucleus	19.23	25.67
GSMUA_Achr8P18930_001	Banana	nucleus	23.75	24.78
GSMUA_Achr11P...	Banana	nucleus	21.91	24.21
GSMUA_Achr11P...	Banana	nucleus	24.41	24.17
GSMUA_Achr4P18240_001	Banana	nucleus	23.91	23.56
GSMUA_Achr5P03960_001	Banana	nucleus	21.24	22.72
GSMUA_Achr5P18540_001	Banana	nucleus	19.4	22.35
GSMUA_Achr5P14630_001	Banana	nucleus	20.4	22.14
GSMUA_Achr10P...	Banana	nucleus	18.23	21.8
GSMUA_Achr6P18900_001	Banana	plastid	14.38	20.92

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ncoils:Coil
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr7G11000_001	EnsemblPlants:GSMUA_Achr7P11000_001	EnsemblPlants:GSMUA_Achr7T11000_001
InterPro:IPR003340	InterPro:IPR015300	UniProt:M0TGI8	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863
PANTHER:PTHR31384	PANTHER:PTHR31384:SF5	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI000294C564	SEG:seg

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G11000_001]

Coordinates

chr7:-:8825546..8830555

Molecular Weight (calculated)

66763.6 Da

IEP (calculated)

5.820

GRAVY (calculated)

-0.493

Length

598 amino acids

Sequence
(BLAST)

001: MEIDLNIIEE EEEEEEEEER KVAAAACCGG RGSVCMELWH ACAGPQIWLP RKGSLVVYFP QGHLEQLGAA GCGGGLVAPR DVPPHVLCRV LDVKLRAEEE
101: TDEVYAQLYL VAENKELEKQ LQDDEAGERR HVEESDDFSK AFTTHMFCKT LTASDTSSHG GFSIPRRAAE DCFPPLDYKQ PRPSQELAAK DLHGTEWRFR
201: HIYRGQPRRH LLTTGWTAFI NKKKLVSGDS VLFLRYAYLT GNDGELRLGI RRSDQLTRVI HSPFNKKNLG ILTDLANAVS ARMVFCINYN PREGKSEFII
301: PYWKFTKSFN HSFSIGTRFK MTIDCEYAAD RRCTGLITGT GELDPLRWPG SKWKCLLVRW DDEVDITSDN RVSPWDIEPT DSISLSYVPP TTGPKRTKKF
401: HPWDHLDHPI PNGVAYPDLG ESARFLEVLQ GQELYPTVPA FQSTPMNALP ESGARLLSRL LGIGSSWPRS FQDSSFLGKS TPTFVPMFPQ ESAQFSHPGA
501: VSTTDEHDKS SFGTEKQMPC VPCNMVDEFA KGHYSSADPK NDENALPHGI KSCRLFGFSL TETIPAANIS AGSVTDMHYE ESESPFGSRK PSSAAGAS

Best Arabidopsis Sequence Match ( AT2G33860.1 )
(BLAST)

001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL

Arabidopsis Description

ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.