CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH20373
KRH21341
KRH50128

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33860.1	KRH20373	AT2G33860.1	24485461
AT2G33860.1	KRH21341	AT2G33860.1	24485461
AT2G33860.1	KRH50128	AT2G33860.1	24485461

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50128	Soybean	nucleus	92.72	93.37
KRH10952	Soybean	nucleus	32.21	79.04
Zm00001d053166_P001	Maize	nucleus	16.25	78.38
KRH21341	Soybean	nucleus	73.25	71.06
KRH10951	Soybean	cytosol, nucleus	38.1	63.55
VIT_10s0003g00420.t01	Wine grape	nucleus	63.59	58.28
Bra021885.1-P	Field mustard	nucleus	42.86	55.43
Bra005465.1-P	Field mustard	nucleus	46.5	54.88
CDY17209	Canola	nucleus	46.08	54.65
CDY37679	Canola	nucleus	45.24	54.38
AT2G33860.1	Thale cress	nucleus	46.22	54.28
CDY27929	Canola	nucleus	45.8	53.78
PGSC0003DMT400081282	Potato	nucleus	52.8	50.4
Solyc02g077560.2.1	Tomato	nucleus	52.66	50.33
GSMUA_Achr10P...	Banana	nucleus	40.48	50.26
TraesCS3A01G246000.1	Wheat	nucleus	43.14	46.25
GSMUA_Achr7P11000_001	Banana	nucleus	38.66	46.15
Os01t0670800-02	Rice	nucleus	45.52	45.26
Os05t0563400-01	Rice	nucleus	44.96	45.08
EES18676	Sorghum	nucleus	46.08	44.52
EES03412	Sorghum	nucleus	43.56	44.3
TraesCS1D01G404400.1	Wheat	nucleus	45.38	44.08
TraesCS1B01G424700.1	Wheat	nucleus	45.8	44.07
TraesCS1A01G396400.1	Wheat	nucleus	44.82	43.54
TraesCS3B01G273400.2	Wheat	nucleus	43.0	43.48
Zm00001d043922_P001	Maize	nucleus	43.0	43.36
GSMUA_Achr4P10590_001	Banana	nucleus	43.28	43.28
GSMUA_Achr4P02750_001	Banana	nucleus	43.14	42.9
GSMUA_Achr7P25330_001	Banana	nucleus	43.28	42.5
Zm00001d039006_P007	Maize	nucleus	45.1	41.93
HORVU1Hr1G076690.6	Barley	nucleus	40.76	41.75
TraesCS3D01G245400.2	Wheat	nucleus	43.42	41.5
TraesCS3A01G292400.1	Wheat	nucleus	37.68	41.19
TraesCS3B01G327000.1	Wheat	nucleus	37.82	40.91
TraesCS1A01G334900.1	Wheat	nucleus	40.2	40.59
Os05t0515400-01	Rice	nucleus	35.29	40.51
KXG33384	Sorghum	nucleus	38.66	40.29
TraesCS1B01G347900.2	Wheat	nucleus	39.22	40.11
TraesCS1D01G337400.1	Wheat	nucleus	39.08	39.97
HORVU3Hr1G072340.2	Barley	nucleus	37.96	39.97
Zm00001d012731_P010	Maize	nucleus	38.52	39.86
TraesCS3D01G292100.1	Wheat	plastid	38.66	39.83
Zm00001d043431_P012	Maize	nucleus	38.52	39.74
KXG22343	Sorghum	nucleus	37.4	39.5
GSMUA_Achr3P31350_001	Banana	nucleus	43.84	39.47
Zm00001d006004_P001	Maize	nucleus	18.63	39.47
Zm00001d038698_P001	Maize	nucleus	37.25	39.12
Os01t0753500-01	Rice	plastid	38.94	38.03
HORVU1Hr1G087460.6	Barley	mitochondrion, nucleus	44.68	37.31
KRH16622	Soybean	mitochondrion	6.72	36.36
KRH25669	Soybean	cytosol	5.46	34.82
KRH19870	Soybean	nucleus	22.97	31.91
KRH34867	Soybean	nucleus	24.79	28.92
KRG91907	Soybean	nucleus	23.95	28.84
KRG95987	Soybean	nucleus	26.61	27.14
KRH32480	Soybean	nucleus	26.33	26.86
KRH22880	Soybean	nucleus	25.07	26.72
KRH25023	Soybean	nucleus	26.05	26.53
KRH18828	Soybean	nucleus	20.45	26.5
KRH29907	Soybean	nucleus	25.77	26.4
KRH26435	Soybean	nucleus	25.35	25.86
KRH64757	Soybean	plastid	20.31	25.8
KRH16623	Soybean	nucleus	11.76	21.76
KRH19868	Soybean	nucleus	0.7	5.62

Protein Annotations

EntrezGene:100808119	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	EMBL:ACUP02008260	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlantsGene:GLYMA_13G174000	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	UniProt:I1M054
InterPro:IPR003340	InterPro:IPR015300	EnsemblPlants:KRH20373	ProteinID:KRH20373	ProteinID:KRH20373.1	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF5	SMART:SM01019	SUPFAM:SSF101936
UniParc:UPI000233B686	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:28805502..28811477

Molecular Weight (calculated)

78290.7 Da

IEP (calculated)

7.129

GRAVY (calculated)

-0.400

Length

714 amino acids

Sequence
(BLAST)

001: MAGLIDLNNA TEDDETPSSG SSSSSSSSTV CLELWHACAG PMISLPKKGS VVVYFPQGHL EQHLHDFPLP ASANIPSHVF CRVLDVKLHA EEGSDEVYCQ
101: VVLVPESEQV QQKLREGEFD ADGEEEDAEA VMKSTTPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD YSQQRPSQEL VAKDLHGQEW RFRHIYRGQP
201: RRHLLTTGWS AFVNKKKLVS GDAVLFLRGE DGELRLGIRR AAQLKSGSTF SALSGQQGSP TSLMDVVNAL SARCAFSIHY NPRVSSSEFI IPIHRFVKSL
301: DYSYSAGMRF RMRFETEDAA ERRFTGLIVG IADVDPVRWP GSRWRCLMVR WDDLEATRHN RVSPWEIEPS GSASTANNLM SAGLKRTKIG LPSAKLDFPV
401: SNAIGTSDFG ESLRFQKVLQ GQEMLGVNTT YDSFNAQSHQ LSDLRRCYPG SNYPRIAATG NSIGISQVSS NVSNNGIGFS ESFRFQKVLQ GQEILPSQPY
501: GRALSVDEAC GNGRFGLFDG FQAMRSRNGW SSHVSNNSSH LHPPVPSGQV SSPSSVFMFQ QAVNPVLNSD YNNQIGQVMG DKVHQRVSYA SEVKGGKFVS
601: TPYEPLLRGL SQEGTNSFGL SNFHNQLDSS RSHDSVSVLR ASQELVPSCK SRCRVFGFSL TEGAPVASKE ATDSSAVACA GPSFTRHVED DFHPGHSLRS
701: KAVASYCTKG VLQY

Best Arabidopsis Sequence Match ( AT2G33860.1 )
(BLAST)

001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL

Arabidopsis Description

ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.