Factsheet for TraesCS3A01G292400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G334900.1
TraesCS1A01G396400.1
TraesCS1B01G347900.2
TraesCS1B01G424700.1
TraesCS1D01G337400.1
TraesCS1D01G404400.1
TraesCS3A01G246000.1
TraesCS3A01G292400.1
TraesCS3B01G273400.2
TraesCS3B01G327000.1
TraesCS3D01G245400.2
TraesCS3D01G292100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33860.1	TraesCS1A01G334900.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS1A01G396400.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS1B01G347900.2	AT2G33860.1	24485461
AT2G33860.1	TraesCS1B01G424700.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS1D01G337400.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS1D01G404400.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS3A01G246000.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS3A01G292400.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS3B01G273400.2	AT2G33860.1	24485461
AT2G33860.1	TraesCS3B01G327000.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS3D01G245400.2	AT2G33860.1	24485461
AT2G33860.1	TraesCS3D01G292100.1	AT2G33860.1	24485461

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G327000.1	Wheat	nucleus	94.79	93.79
TraesCS3D01G292100.1	Wheat	plastid	95.1	89.61
HORVU3Hr1G072340.2	Barley	nucleus	92.19	88.79
Os01t0753500-01	Rice	plastid	74.73	66.76
KXG33384	Sorghum	nucleus	69.37	66.13
Zm00001d043431_P012	Maize	nucleus	67.99	64.16
Zm00001d012731_P010	Maize	nucleus	67.69	64.06
TraesCS1A01G334900.1	Wheat	nucleus	61.72	57.0
CDY17209	Canola	nucleus	40.28	43.69
AT2G33860.1	Thale cress	nucleus	40.43	43.42
TraesCS3A01G246000.1	Wheat	nucleus	44.26	43.39
Bra005465.1-P	Field mustard	nucleus	40.12	43.31
CDY37679	Canola	nucleus	39.2	43.1
CDY27929	Canola	nucleus	39.97	42.93
Bra021885.1-P	Field mustard	nucleus	35.68	42.21
GSMUA_Achr4P10590_001	Banana	nucleus	45.48	41.6
GSMUA_Achr4P02750_001	Banana	nucleus	44.41	40.39
TraesCS1A01G396400.1	Wheat	nucleus	44.87	39.86
KRH21341	Soybean	nucleus	43.19	38.32
KRH20373	Soybean	nucleus	41.19	37.68
KRH50128	Soybean	nucleus	40.89	37.66
GSMUA_Achr3P31350_001	Banana	nucleus	45.33	37.33
GSMUA_Achr7P25330_001	Banana	nucleus	41.35	37.14
VIT_10s0003g00420.t01	Wine grape	nucleus	44.26	37.1
Solyc02g077560.2.1	Tomato	nucleus	42.11	36.81
PGSC0003DMT400081282	Potato	nucleus	42.11	36.76
TraesCS2A01G567300.1	Wheat	nucleus	19.91	25.24
TraesCS6A01G222300.1	Wheat	nucleus	25.57	24.85
TraesCS1A01G156600.1	Wheat	nucleus	25.57	24.27
TraesCS7A01G446900.1	Wheat	nucleus	26.03	24.25
TraesCS7A01G475700.1	Wheat	nucleus	13.32	23.45
TraesCS7A01G475600.1	Wheat	nucleus	13.32	23.26
TraesCS2A01G380300.1	Wheat	nucleus	9.04	14.6

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ncoils:Coil
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009987	InterPro:IPR003340
InterPro:IPR015300	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF13
SMART:SM01019	SUPFAM:SSF101936	EnsemblPlantsGene:TraesCS3A01G292400	EnsemblPlants:TraesCS3A01G292400.1	TIGR:cd10017	SEG:seg

Description

No Description!

Coordinates

chr3A:-:522271420..522277032

Molecular Weight (calculated)

70312.6 Da

IEP (calculated)

8.051

GRAVY (calculated)

-0.316

Length

653 amino acids

Sequence
(BLAST)

001: MGIDLNAAGE PGKAAAVSVC RDLWHACAGP VVALPRRGSA VVYLPQAHLA GAGGGGDVPV ALPPHVACRV VDVELCADPA TDEVYARLAM VAEGEVFEKN
101: MGGGRFEGED DMEDGDGERK SRMLHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYQQ VRPSQELVAK DLHGAKWRFR HIYRGQPRRH LLTTGWSSFV
201: NKKKLVSGDA VLFLRGDDGE LRLGVRRAIQ LKNEALLKSF NSNSSKIHTL SAMANSLKHR SVFHICYNPR AAASEFIVPY WKFLKSLNRP FCIGMRFKIQ
301: YGSEDVNERR SGIITGINEV DPIRWTGSKW KSLQVRWEDG TDCNSQNRLS PWDIEIVGGS VSIAQSLSAS SSKRTKLCPQ GNVDVPTLYG NGRPDSVGAD
401: KLPRVLQGQE LMGSGTHRVT CPPRPGGATE FRRSDGTGFL ADTRSCMLSG PASRLPPQSP YFAYQPVGFG ESVGFPEVLQ GQEVCQTVPL FQGMVSDTCS
501: AKGGYGLYNY MCTSSAMNGG FSSAAQGYPL SLSTPPPAEV ASPSSTVAAP QLWLASKNNE EAAIGSQPNP LGTRKASGDG AAKLGSDGRK VARTSCMLFG
601: FSLTEKMLPT EEDCAKEGNH EVDCQNPRML DLFGYNRATP GALHALCAAP LGI

Best Arabidopsis Sequence Match ( AT2G33860.1 )
(BLAST)

001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL

Arabidopsis Description

ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.