Factsheet for TraesCS1D01G404400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G334900.1
TraesCS1A01G396400.1
TraesCS1B01G347900.2
TraesCS1B01G424700.1
TraesCS1D01G337400.1
TraesCS1D01G404400.1
TraesCS3A01G246000.1
TraesCS3A01G292400.1
TraesCS3B01G273400.2
TraesCS3B01G327000.1
TraesCS3D01G245400.2
TraesCS3D01G292100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33860.1	TraesCS1A01G334900.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS1A01G396400.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS1B01G347900.2	AT2G33860.1	24485461
AT2G33860.1	TraesCS1B01G424700.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS1D01G337400.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS1D01G404400.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS3A01G246000.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS3A01G292400.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS3B01G273400.2	AT2G33860.1	24485461
AT2G33860.1	TraesCS3B01G327000.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS3D01G245400.2	AT2G33860.1	24485461
AT2G33860.1	TraesCS3D01G292100.1	AT2G33860.1	24485461

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G396400.1	Wheat	nucleus	97.28	97.28
TraesCS1B01G424700.1	Wheat	nucleus	97.69	96.77
Zm00001d053166_P001	Maize	nucleus	18.23	90.54
HORVU1Hr1G087460.6	Barley	mitochondrion, nucleus	92.52	79.53
Os05t0563400-01	Rice	nucleus	73.2	75.56
EES18676	Sorghum	nucleus	72.24	71.85
Zm00001d039006_P007	Maize	nucleus	71.56	68.49
TraesCS3D01G245400.2	Wheat	nucleus	60.27	59.3
CDY17209	Canola	nucleus	40.14	49.0
CDY37679	Canola	nucleus	39.59	48.99
Bra005465.1-P	Field mustard	nucleus	40.27	48.93
CDY27929	Canola	nucleus	40.27	48.68
Bra021885.1-P	Field mustard	nucleus	36.46	48.55
Zm00001d006004_P001	Maize	nucleus	22.04	48.07
AT2G33860.1	Thale cress	nucleus	39.46	47.7
KRH50128	Soybean	nucleus	44.22	45.84
KRH20373	Soybean	nucleus	44.08	45.38
KRH21341	Soybean	nucleus	45.31	45.24
GSMUA_Achr4P10590_001	Banana	nucleus	43.67	44.96
VIT_10s0003g00420.t01	Wine grape	nucleus	46.67	44.03
TraesCS1D01G337400.1	Wheat	nucleus	41.77	43.98
GSMUA_Achr4P02750_001	Banana	nucleus	42.59	43.59
TraesCS3D01G292100.1	Wheat	plastid	40.95	43.43
GSMUA_Achr7P25330_001	Banana	nucleus	42.18	42.64
PGSC0003DMT400081282	Potato	nucleus	43.13	42.38
Solyc02g077560.2.1	Tomato	nucleus	41.9	41.23
GSMUA_Achr3P31350_001	Banana	nucleus	43.95	40.73
TraesCS2D01G577800.1	Wheat	nucleus	18.37	26.32
TraesCS1D01G155100.1	Wheat	nucleus	24.63	26.31
TraesCS7D01G436800.1	Wheat	nucleus	24.22	25.61
TraesCS2D01G376600.1	Wheat	nucleus	24.49	25.21
TraesCS6D01G212700.1	Wheat	plastid	24.76	23.67
TraesCS7D01G463000.1	Wheat	nucleus	10.75	22.32

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF31	SMART:SM01019
SUPFAM:SSF101936	EnsemblPlantsGene:TraesCS1D01G404400	EnsemblPlants:TraesCS1D01G404400.1	TIGR:cd10017	SEG:seg	:

Description

No Description!

Coordinates

chr1D:+:469215517..469220344

Molecular Weight (calculated)

80362.4 Da

IEP (calculated)

7.520

GRAVY (calculated)

-0.514

Length

735 amino acids

Sequence
(BLAST)

001: MAGIDLNTVE EDEEESSAEL LLAGSGGGGD CSSQSQSHSH SHSHSQTHSG HGQASSSVAA ATPPRPSAVC LELWHACAGP VAPMPRKGGV VVYLPQGHLD
101: HLGDAPAPSP AAVPPHVFCR VVDVTLHADA STDEVYAQLS LLPENEEVVR RMREATEDGS GGEDGETVKQ RFARMPHMFC KTLTASDTST HGGFSVPRRA
201: AEDCFPPLDY SQQRPSQELV AKDLHGTEWK FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GELRLGVRRA VQLKNGSAFP ALYSQCSNLG
301: TLANVAHAVA TKSMFQIFYN PRLSQSEFIV PYWKFTKSFS QPFSVGLRFK MRYESEDAAE RRYTGIITGT GDADPMWRGS KWKCLLVRWD DDGEFRRPNR
401: VSPWEIELTS SASGSHLAAP TSKRMKPYLP HANPEFTVPH GGGRPDFAES AQLRKVLQGQ ELLGYRTHDG TAVATSQPCE ARNLQYIDER GCSNNVSNNV
501: LGGVPSHGVR TPLGIPYHCS GFGESQRFQK VLQGQEVFRP YRGSLVDARM RNGGFQQQDG PYASGLLDKW RAQQQHAFGF GPPAPVLPSQ PSLSPPSVLM
601: FQQADPKVSR FEFGHGHLDK NVDDPYARFV SAEGIGRGEQ TLSLRPHLGS EVIDSRVAVE NKGVAPTNSC KIFGISLAEK VRARDEMGCD DGGANYPSPT
701: QPLKQQVPKS LGNSCATVHE QRPVVGRAID VQQWI

Best Arabidopsis Sequence Match ( AT2G33860.1 )
(BLAST)

001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL

Arabidopsis Description

ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.