Factsheet for TraesCS3B01G273400.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G334900.1
TraesCS1A01G396400.1
TraesCS1B01G347900.2
TraesCS1B01G424700.1
TraesCS1D01G337400.1
TraesCS1D01G404400.1
TraesCS3A01G246000.1
TraesCS3A01G292400.1
TraesCS3B01G273400.2
TraesCS3B01G327000.1
TraesCS3D01G245400.2
TraesCS3D01G292100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33860.1	TraesCS1A01G334900.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS1A01G396400.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS1B01G347900.2	AT2G33860.1	24485461
AT2G33860.1	TraesCS1B01G424700.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS1D01G337400.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS1D01G404400.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS3A01G246000.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS3A01G292400.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS3B01G273400.2	AT2G33860.1	24485461
AT2G33860.1	TraesCS3B01G327000.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS3D01G245400.2	AT2G33860.1	24485461
AT2G33860.1	TraesCS3D01G292100.1	AT2G33860.1	24485461

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G246000.1	Wheat	nucleus	87.54	92.79
TraesCS3D01G245400.2	Wheat	nucleus	94.76	89.56
Os01t0670800-02	Rice	nucleus	75.07	73.82
EES03412	Sorghum	nucleus	67.99	68.38
Zm00001d043922_P001	Maize	nucleus	68.56	68.36
TraesCS1B01G424700.1	Wheat	nucleus	61.33	58.36
CDY37679	Canola	nucleus	39.09	46.46
Bra021885.1-P	Field mustard	nucleus	35.84	45.83
CDY17209	Canola	nucleus	38.67	45.35
TraesCS3B01G327000.1	Wheat	nucleus	42.35	45.3
AT2G33860.1	Thale cress	nucleus	38.95	45.23
Bra005465.1-P	Field mustard	nucleus	38.67	45.12
CDY27929	Canola	nucleus	38.81	45.07
GSMUA_Achr4P10590_001	Banana	nucleus	45.33	44.82
TraesCS1B01G347900.2	Wheat	nucleus	44.19	44.7
GSMUA_Achr4P02750_001	Banana	nucleus	45.04	44.29
KRH50128	Soybean	nucleus	43.77	43.58
GSMUA_Achr7P25330_001	Banana	nucleus	44.76	43.47
KRH20373	Soybean	nucleus	43.48	43.0
VIT_10s0003g00420.t01	Wine grape	nucleus	46.74	42.36
GSMUA_Achr3P31350_001	Banana	nucleus	47.17	41.99
KRH21341	Soybean	nucleus	43.48	41.71
Solyc02g077560.2.1	Tomato	nucleus	42.92	40.56
PGSC0003DMT400081282	Potato	nucleus	42.92	40.51
TraesCS1B01G173700.1	Wheat	nucleus	25.78	26.34
TraesCS7B01G346700.1	Wheat	nucleus	25.64	26.08
TraesCS2B01G397300.1	Wheat	nucleus	25.78	25.71
TraesCS6B01G258800.1	Wheat	mitochondrion	25.78	24.36

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF31	SMART:SM01019
SUPFAM:SSF101936	EnsemblPlantsGene:TraesCS3B01G273400	EnsemblPlants:TraesCS3B01G273400.2	TIGR:cd10017	SEG:seg	:

Description

No Description!

Coordinates

chr3B:-:440405651..440411005

Molecular Weight (calculated)

77858.7 Da

IEP (calculated)

6.716

GRAVY (calculated)

-0.449

Length

706 amino acids

Sequence
(BLAST)

001: MIGIDLNTVE EDEEEGGPSA EPPRGTVCLE LWHACAGRVG SLPRKGSAVV YLPEGHLEHI GEAAGAVPPH VFCRVVDVNL QADPAMDEVY AQVSLVVDDE
101: EAKRRMRPGE SEEACEGDSE DTDAAKRRAR MPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYNLQR PSQELVTKDL HGTEWRFRHI YRGQPRRHLL
201: TTGWSAFVNK KKLVSGDAVL FLRDEDGVLR LGVRRAAQLK NVSPFPALFN QDSSLSSLGN VAHAVAVKNI FHIYYNPRLC ESEFIVPYWK FMRSFSEPFS
301: VGMRFKMKYE NEDASERRST GIITGSRESD LKSHGSKWKC LVVRWDDDVE CRWPNRVSPW EIELTGSVSG SHLSSPHSKR LKPCLPQVNP DMLLPTILAG
401: GSVSSDFAES ARFHKVLQGQ ELLGSKTHDG TANSASRASE ARNFQYSDDR NCSINMSNIP GVPELGARTP PENHGFSYHC SGFGESQRFQ RVLQGQEVFH
501: PYEGGTLSDA VIRGSSFCQP DGNCTSGATY KWLTSQGCDY SGPVTLAMPQ ASSPLSVLMF PQTSSKIHGF EYVCRSLDKD DNIRHVTVNA TQDMGRTSHA
601: LPLWPHLVSG KAIASCTGTK KLHSISSAEH EPNDKDVHTN GCKIFGISLT QKVRVCNEVE CSSANCDFQP LKPQMSKSLG NNCATVHEQR PAVGMVVDLS
701: AVDTMI

Best Arabidopsis Sequence Match ( AT5G60450.2 )
(BLAST)

001: MEFDLNTEIA EVEEEENDDV GVGVGGGTRI DKGSASSIYS ELWHACAGPL TCLPKKGNVV VYFPQGHLEQ DAMVSYSSPL EIPKFDLNPQ IVCRVVNVQL
101: LANKDTDEVY TQVTLLPLQE FSMLNGEGKE VKELGGEEER NGSSSVKRTP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFA PLDYKQQRPS QELIAKDLHG
201: VEWKFRHIYR GQPRRHLLTT GWSIFVSQKN LVSGDAVLFL RDEGGELRLG IRRAARPRNG LPDSIIEKNS CSNILSLVAN AVSTKSMFHV FYSPRATHAE
301: FVIPYEKYIT SIRSPVCIGT RFRMRFEMDD SPERRCAGVV TGVCDLDPYR WPNSKWRCLL VRWDESFVSD HQERVSPWEI DPSVSLPHLS IQSSPRPKRP
401: WAGLLDTTPP GNPITKRGGF LDFEESVRPS KVLQGQENIG SASPSQGFDV MNRRILDFAM QSHANPVLVS SRVKDRFGEF VDATGVNPAC SGVMDLDRFP
501: RVLQGQEICS LKSFPQFAGF SPAAAPNPFA YQANKSSYYP LALHGIRSTH VPYQNPYNAG NQSSGPPSRA INFGEETRKF DAQNEGGLPN NVTADLPFKI
601: DMMGKQKGSE LNMNASSGCK LFGFSLPVET PASKPQSSSK RICTKVHKQG SQVGRAIDLS RLNGYDDLLM ELERLFNMEG LLRDPEKGWR ILYTDSENDM
701: MVVGDDPWHD FCNVVWKIHL YTKEEVENAN DDNKSCLEQA ALMMEASKSS SVSQPDSSPT ITRV

Arabidopsis Description

ARF4Auxin response factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.