Factsheet for TraesCS3D01G292100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G334900.1
TraesCS1A01G396400.1
TraesCS1B01G347900.2
TraesCS1B01G424700.1
TraesCS1D01G337400.1
TraesCS1D01G404400.1
TraesCS3A01G246000.1
TraesCS3A01G292400.1
TraesCS3B01G273400.2
TraesCS3B01G327000.1
TraesCS3D01G245400.2
TraesCS3D01G292100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33860.1	TraesCS1A01G334900.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS1A01G396400.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS1B01G347900.2	AT2G33860.1	24485461
AT2G33860.1	TraesCS1B01G424700.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS1D01G337400.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS1D01G404400.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS3A01G246000.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS3A01G292400.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS3B01G273400.2	AT2G33860.1	24485461
AT2G33860.1	TraesCS3B01G327000.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS3D01G245400.2	AT2G33860.1	24485461
AT2G33860.1	TraesCS3D01G292100.1	AT2G33860.1	24485461

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G292400.1	Wheat	nucleus	89.61	95.1
TraesCS3B01G327000.1	Wheat	nucleus	90.04	94.55
HORVU3Hr1G072340.2	Barley	nucleus	88.31	90.27
Os01t0753500-01	Rice	plastid	73.16	69.36
KXG33384	Sorghum	nucleus	66.23	67.01
Zm00001d012731_P010	Maize	nucleus	64.94	65.22
Zm00001d043431_P012	Maize	nucleus	64.79	64.88
TraesCS1D01G337400.1	Wheat	nucleus	57.0	56.59
AT2G33860.1	Thale cress	nucleus	38.96	44.41
CDY17209	Canola	nucleus	38.53	44.35
Bra005465.1-P	Field mustard	nucleus	38.38	43.97
CDY37679	Canola	nucleus	37.37	43.6
CDY27929	Canola	nucleus	38.24	43.59
Bra021885.1-P	Field mustard	nucleus	34.2	42.93
GSMUA_Achr4P10590_001	Banana	nucleus	43.58	42.3
GSMUA_Achr4P02750_001	Banana	nucleus	42.71	41.23
TraesCS1D01G404400.1	Wheat	nucleus	43.43	40.95
TraesCS3D01G245400.2	Wheat	nucleus	43.15	40.03
KRH21341	Soybean	nucleus	41.27	38.86
KRH20373	Soybean	nucleus	39.83	38.66
KRH50128	Soybean	nucleus	39.54	38.65
GSMUA_Achr7P25330_001	Banana	nucleus	40.26	38.38
GSMUA_Achr3P31350_001	Banana	nucleus	43.72	38.21
VIT_10s0003g00420.t01	Wine grape	nucleus	42.86	38.13
PGSC0003DMT400081282	Potato	nucleus	41.13	38.1
Solyc02g077560.2.1	Tomato	nucleus	40.98	38.02
TraesCS2D01G577800.1	Wheat	nucleus	19.19	25.93
TraesCS1D01G155100.1	Wheat	nucleus	24.53	24.71
TraesCS7D01G436800.1	Wheat	nucleus	24.24	24.17
TraesCS2D01G376600.1	Wheat	nucleus	23.95	23.25
TraesCS6D01G212700.1	Wheat	plastid	24.53	22.11
TraesCS7D01G463000.1	Wheat	nucleus	10.53	20.62

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF13	SMART:SM01019
SUPFAM:SSF101936	EnsemblPlantsGene:TraesCS3D01G292100	EnsemblPlants:TraesCS3D01G292100.1	TIGR:cd10017	SEG:seg	:

Description

No Description!

Coordinates

chr3D:-:401894025..401899417

Molecular Weight (calculated)

74307.2 Da

IEP (calculated)

8.434

GRAVY (calculated)

-0.316

Length

693 amino acids

Sequence
(BLAST)

001: MGPSSCSTSS PRPRLIPRPP AFNRAPPFPD GTAGLRAGAM GIDLNAAGEP GKAAAAVSVC RDLWHACAGP VVALPRRGSA VVYLPQAHLA AAGGGGDVPV
101: ALPPHVACRV VDVELCADPA TDEVYARLAL VAEGEVFEKN MGGGRFEGED DMEDGDGERK SRMLHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYQQ
201: IRPSQELVAK DLHGAKWRFR HIYRGQPRRH LLTTGWSSFV NKKKLVSGDA VLFLRGDDGE LRLGVRRAIQ LKNEALLKAF NSNSSKIHTL SAVANSLKHR
301: SVFHICYNPR AAASEFIIPY WKFLKSLNRP FCIGMRFKIQ YGSEDVNERR SGMITGINDV DPIRWTGSKW KSLLVRWEDG TDCNSQNRLS PWEIEIVGGS
401: VSIAQSLSAS SSKRTKLCPQ GNVDVPTLYG NGRPDSVGAD KLPRVLQGQE LMGSGTHRVT CPPQPGGATE FRRSDGTGFL ANTRSCMLSG PASRFPPQSP
501: YFAYQPVGFG ESVGFPEVLQ GQEVSQTVPL FQGIVSDTCS AKGGYGLYNY MRTSSAMNGG FSSAAQGYPL SLSTPPPAEA ASPSSAAVPP QLWLASKSNE
601: EAANGSQLNQ FGIPKSPGDG AAKLGSDGRK VARTSCMLFG FSLTEKMLPT EEDCAKEGSH EADCQNPRML DLFGYNRATP GALHALCAAP LGI

Best Arabidopsis Sequence Match ( AT2G33860.1 )
(BLAST)

001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL

Arabidopsis Description

ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.